Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6k02
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0061 + 28117007-28117846                                         27   7.2  
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090...    27   7.2  
11_04_0128 + 13752727-13752809,13752922-13753129,13753238-137533...    27   9.5  
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    27   9.5  

>11_08_0061 + 28117007-28117846
          Length = 279

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 285 VLLSLMTADGTNE*AGPIAPAWWRHLYYAATLSCHC 392
           V++S + A  T +  GP+A  W RH  Y  +L   C
Sbjct: 9   VVVSCLAAPATADWYGPLAVYWGRHKDYEGSLREAC 44


>06_03_1367 +
           29607008-29607501,29608726-29608906,29609006-29609065,
           29609486-29609649,29609723-29609888,29609889-29609957,
           29610060-29610155,29610345-29610389,29610765-29610835,
           29610996-29611062,29611150-29611200,29611276-29611686
          Length = 624

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 321 E*AGPIAPAWWRHLYYAATLSCHCRSFTF 407
           E AGP+ PAW R L +   +S  C  F+F
Sbjct: 137 EGAGPM-PAWRRRLMWITRISARCILFSF 164


>11_04_0128 +
           13752727-13752809,13752922-13753129,13753238-13753303,
           13753611-13753767,13755629-13755712,13756355-13756461,
           13756832-13756958,13757319-13757407,13757812-13757943
          Length = 350

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 316 VPSAVIKLNKTCYLCFITLRGTLVKDRSNRKVKGYMVLATFLQIYRTI 173
           +P+AV    K C       R T+V++R NR ++G +      Q+ R +
Sbjct: 162 LPNAVYSAAKDCSCLNSAGRATVVRNRGNRGMQGRVERRAMNQVTRNL 209


>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335 DSSGVVAPLVLRGDAVMSLSEFYVH 409
           DS+ V+AP  +R  AV + SE YVH
Sbjct: 549 DSTDVLAPATVRRLAVQNSSERYVH 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,025
Number of Sequences: 37544
Number of extensions: 156607
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)