Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6j23
(252 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 77 3e-16
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 37 4e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 6e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 6e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.006
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.008
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.041
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.054
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.054
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.071
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.071
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.12
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.12
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 0.22
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.22
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 0.29
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 0.66
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 0.66
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 0.66
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 1.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 1.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 1.2
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 1.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 2.0
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 2.0
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 24 2.7
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 24 2.7
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 24 2.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 2.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 2.7
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 2.7
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 24 2.7
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 24 3.5
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 24 3.5
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 24 3.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 4.7
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 23 6.2
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 23 6.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 23 8.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 23 8.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 23 8.2
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 23 8.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 23 8.2
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 23 8.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 23 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 77.4 bits (182), Expect = 3e-16
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
Frame = +2
Query: 2 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-----GKIFVG 166
V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R K+FVG
Sbjct: 194 VMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVG 252
Query: 167 GLTSEISDDEIRNFFSEFGTILEVEM 244
G+ + +++E RNFF++FG +L+ +
Sbjct: 253 GVPGDCTEEEFRNFFNQFGRVLDATL 278
Score = 40.3 bits (90), Expect = 4e-05
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 149 GKIFVGGLTSEISDDEIRNFFSEFGTILE 235
GK+F+GGL E +DD +R++F +FG +L+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLD 191
Score = 36.3 bits (80), Expect = 6e-04
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 136
D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 38.3 bits (85), Expect = 2e-04
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 125 PKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEMP 247
P+ A + +FVGGL+ +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 25.0 bits (52), Expect = 1.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 2 VKTDPNTGRSRGFAFIVF 55
+ TDP T SRG+ F+ F
Sbjct: 218 IMTDPQTNVSRGYGFVRF 235
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.1 bits (82), Expect = 4e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEMPF 250
+FVGGL S +S+ +++ F FG IL +++PF
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF 330
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 6e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 95 EHTINNKKVDPKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
E TI K + K + + G ++VG L + ++R +FS+FG +L + M
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRM 136
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 6e-04
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 74 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
D+V E T +KK P+ ++ +FV G+ S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 33.5 bits (73), Expect = 0.004
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 65 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
+ ++ + A H + P + +A ++FVG L++ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 245 PF 250
PF
Sbjct: 76 PF 77
Score = 24.6 bits (51), Expect = 2.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 35 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 133
G AF+ F E +DK + T+N K +D ++
Sbjct: 90 GIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.1 bits (72), Expect = 0.006
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 104 INNKKVD-PKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTI 229
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 25.0 bits (52), Expect = 1.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 14 PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 133
PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 419 PNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 32.7 bits (71), Expect = 0.008
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVG 166
D T RS G+A++ F E +K + +T+ + DP K G +F+
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIK 173
Query: 167 GLTSEISDDEIRNFFSEFGTILEVEM 244
L I + + + FS FG IL ++
Sbjct: 174 NLDPAIDNKALHDTFSAFGKILSCKV 199
Score = 26.2 bits (55), Expect = 0.66
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 2 VKTDPNTGRSRGFAFIVFKAPESIDKVM 85
+ TD G+S+GF F+ + PE +K +
Sbjct: 395 IMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.008
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 152 KIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
+I+VGGL+S I ++ + FS FG++ +E+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.041
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 23/102 (22%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV-----DPKK------AKARHGK 154
D +GRS+G+ ++ F+ PE+ +AA G I+ + V +P+ A+ R G
Sbjct: 297 DGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGN 356
Query: 155 -----------IFVGGLTSEISDDEIRNFFSEFGTILEVEMP 247
+FVG L+ ++D++ F G I + +P
Sbjct: 357 FGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLP 398
Score = 29.9 bits (64), Expect = 0.054
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 8 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 106
TDP +GR +GF ++ F +S K + H I
Sbjct: 399 TDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 25.0 bits (52), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTIL 232
+FVG L+ + D + F E+GTI+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIV 290
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.054
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMAAGE 97
DP T +GFA+I FK +DK + E
Sbjct: 304 DPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.054
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 119 VDPKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTI 229
+ P K +F+GG+T + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.071
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 2 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 121
V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 36 VVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 25.8 bits (54), Expect = 0.88
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTI 229
+FV L + D++ NFFS+ G I
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPI 31
Score = 24.6 bits (51), Expect = 2.0
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 68 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTI 229
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPL 303
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.071
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +2
Query: 146 HGKIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
H ++FVG L ++++D+ + FSE+ ++++ ++
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.12
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
I++G L ++++D+I FSEFG +++ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINL 62
Score = 24.6 bits (51), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPES 70
D TG+S+GFAF+ ++ S
Sbjct: 65 DKETGKSKGFAFLKYEDQRS 84
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.12
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 145
DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 126 DPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 0.22
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 0.22
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 2 VKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 154
+ TD +GR +G+AF+ F P++ I K + HTI +K++ + GK
Sbjct: 123 IPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 0.29
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 32 RGFAFIVFKAPESIDKVMAAGEHTINNKK 118
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 0.66
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 125 PKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEMPF 250
P++ + +GK L S ++E+RN FSEF LE E+ F
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSF 984
Score = 22.6 bits (46), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 158 FVGGLTSEISDDEIRNFFSEF 220
F+ L SE+S + +R+F EF
Sbjct: 974 FIQHLESEVSFNSLRSFVQEF 994
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 0.66
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 185 SDDEIRNFFSEFGTILEVEM 244
+++ IR+FFS+FG + +VE+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL 274
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 0.66
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 1.2
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -1
Query: 252 SKGISTSKIVPNSLKKFLISSSEISLVSPPTKIFPCRALAF---FGSTFLLLMVCSPAAM 82
S +S+S ++P+S ++SSS + +S + P + +F S+F+ +V S +
Sbjct: 32 STSLSSSSVIPSS-SSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQ 90
Query: 81 TLSIDSGALNTMKA 40
+ S + ++ A
Sbjct: 91 SSSSSASLTSSSSA 104
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 1.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
++V L I+ E+R++F FG IL ++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 1.2
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +2
Query: 152 KIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
++FVG + + + +++ +FF +G IL+ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 1.5
Identities = 6/31 (19%), Positives = 20/31 (64%)
Frame = +2
Query: 152 KIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
++FV ++ ++ +++R F FG + ++++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDL 125
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 23 GRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 115
G S+GF F FK P + ++ G+ T NK
Sbjct: 348 GSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 2.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 207 KFLISSSEISLVSPPTKIFPCRALAFFGSTFLLLMVCSPAAMTLSIDSGALN 52
K+L+S+S ++ + +AFF + + +M C+ + T SI +G LN
Sbjct: 34 KYLLSASTNDVLLV-WDLHTSNKVAFFEAPSVWIMTCAFSPSTKSIAAGGLN 84
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 132 FFGSTFLLLMVCSPAAMTLSIDSGALNTMKANPRDLPVFGSV 7
F+G T LL+ + A++ S L + +P D F SV
Sbjct: 187 FWGGTHLLMQLKKYASLEQSSHESQLYLVNPSPEDTVAFQSV 228
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDK 79
D TG S +AFI F ES++K
Sbjct: 278 DKETGDSLQYAFIEFDNKESVEK 300
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 24.2 bits (50), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 56 KAPESIDKVMAAGEHTINNKKVDPKKA 136
K S+ K ++ HT N K + PKKA
Sbjct: 570 KVDLSVAKEISHFVHTTNRKHISPKKA 596
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 2.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 216 SLKKFLISSSEISLVSPPTKIF 151
SL+ + ++S+ISLV PTK +
Sbjct: 1039 SLESYKFTTSKISLVKNPTKTY 1060
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.2 bits (50), Expect = 2.7
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = -1
Query: 243 ISTSKIVPNSLKKFLISSSEISLVSPPTKIFPCRALAFFGSTFLLLMVCSPAAMTL---- 76
+S+S P+S + SSS S S + P + S+ +L +P+ +L
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISS 639
Query: 75 -SIDSGALNTMKANPRDLPVFGSVFT 1
SI SG+ + + ++ +P+ S+ T
Sbjct: 640 SSIISGSSSILSSSISTIPISSSLST 665
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = -1
Query: 225 VPNSLKKFLISSSEISLVSPPTKIFPCRALAFFGSTFLLLMVCSPAAMTLSIDSGALNTM 46
VP+ ++ LISSS I L +P + F L +L + + ID G +
Sbjct: 319 VPSKVRDALISSSRILLYTPENEHFGIVPLEAMLRKVPVLAQTNGGPLETVID-GKNGWL 377
Query: 45 KANPRDLPVFGSV 7
+ PRD ++G+V
Sbjct: 378 R--PRDAKIWGNV 388
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 2.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVF 55
D TGR++GFAF+ +
Sbjct: 236 DKETGRAKGFAFVSY 250
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 128 KKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEV 238
K+ + + V L+ + ++E+R+ F FG I V
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRV 231
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 8 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 103
T +TG+ +GF F+ F ++ K M G ++
Sbjct: 261 TFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 23.8 bits (49), Expect = 3.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 139 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLY 2
F+LL L + GV Y ++ + H+ G P WICL+
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLW 130
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 23.8 bits (49), Expect = 3.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 20 TGRSRGFAFIVFK 58
TG+S G+AF+VF+
Sbjct: 137 TGKSMGYAFVVFE 149
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +2
Query: 68 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLTSEISDDEIR 202
S + V+ + +HT+++ +K + + GLTS + D++++
Sbjct: 729 SNNHVLDSSKHTVSSASTSSRKFIENYKSLESIGLTSFVKDNKLK 773
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.0 bits (47), Expect = 6.2
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = -1
Query: 216 SLKKFLISSSEISLVSPPTKIFPCRALAFFGSTFLLLMVCSPAAMTLSIDSGALNTM 46
S+K + ++ V PP + CRA+ +LL C+ + +++ G + +
Sbjct: 64 SIKDAKAEARLLTYVIPPGESSKCRAMKAEIEDWLLTQSCTRDTILIAMGGGVIGDL 120
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 23.0 bits (47), Expect = 6.2
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +2
Query: 83 MAAGEHTINNKKVDPKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
M A E K KK + I+VG L S ++ F FG + M
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM 51
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 62 PESIDKVMAAGEHTI 106
P SI KV +GEHTI
Sbjct: 628 PLSITKVEESGEHTI 642
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 22.6 bits (46), Expect = 8.2
Identities = 19/72 (26%), Positives = 27/72 (37%)
Frame = +2
Query: 26 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLTSEISDDEIRN 205
R F + + K+ A G T N+ + PK KAR L + R
Sbjct: 530 RDEWFTLAIKTREKRRHKINATGMTTTNSVPLRPKSRKARR------ALKKKARKMTFRQ 583
Query: 206 FFSEFGTILEVE 241
S+F + LE E
Sbjct: 584 MHSDFQSALEDE 595
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = +2
Query: 155 IFVGGLTSEISDDEIRNFFSEFGTILEVEM 244
+FV L + ++ E+ +FF + G + + ++
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQI 271
Score = 22.6 bits (46), Expect = 8.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 11 DPNTGRSRGFAFIVFKAPESIDKVMA 88
D +GRS+G A++ F +S+ +A
Sbjct: 274 DKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 161 VGGLTSEISDDEIRNFFSEFGTIL 232
V E D+EI NF+ E G L
Sbjct: 255 VSSQVQEDKDEEIDNFYKEIGGYL 278
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 14 PNTGRSRGFAFIVFKAP 64
PN GRS+G A I+F P
Sbjct: 91 PN-GRSKGIATIIFSRP 106
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 22.6 bits (46), Expect = 8.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 12 IQTQADHEGLPSLCLRPQSQ*TRSWLLVNTPSTT 113
I+ + LPSL + P S+ ++TPST+
Sbjct: 504 IRPSKNENNLPSLAISPVSEGFIQNATISTPSTS 537
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 107 NNKKVDPKKAKARHGKIFVGGLTSEISDDEIRNFFSEFGTI 229
+NKK + ++ +R +++ GL SD+ + + + FG +
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKV 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,594
Number of Sequences: 5004
Number of extensions: 18061
Number of successful extensions: 120
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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