Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j23
         (252 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.11 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   4.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.11
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 96  SPAAMTLSIDSGALNTM 46
           SPA  ++S+DSG++NT+
Sbjct: 555 SPAIESISVDSGSINTV 571


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 104 INNKKVDPKKAK--ARHGKIFVGGLTSEIS 187
           +NNK++DPK         +I   G+ S++S
Sbjct: 812 MNNKRLDPKSDSRYTIREEILANGVLSDLS 841


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 64  RVNRQGHGCW*TH 102
           ++NR G  CW T+
Sbjct: 315 QINRNGIACWDTN 327


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 102 VCSPAAMTLSIDSGALNTMKANPRDLPV 19
           +CSP  +T  + +  L      P D+ V
Sbjct: 149 MCSPKLLTFDLTTSQLLKQVEIPHDVAV 176


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 102 VCSPAAMTLSIDSGALNTMKANPRDLPV 19
           +CSP  +T  + +  L      P D+ V
Sbjct: 149 MCSPKLLTFDLTTSQLLKQVEIPHDVAV 176


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 102 VCSPAAMTLSIDSGALNTMKANPRDLPV 19
           +CSP  +T  + +  L      P D+ V
Sbjct: 149 MCSPKLLTFDLTTSQLLKQVEIPHDVAV 176


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 67  VNRQGHGCW*THH 105
           VN +GH  W T H
Sbjct: 505 VNLKGHAHWLTLH 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,713
Number of Sequences: 438
Number of extensions: 1013
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)