Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j16
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.5  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   4.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   6.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.1  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.0  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 368 ELVEYSLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNNTTHERRRH 529
           E+ E   GL    VGKGD  +   S  + +   LP P+   V  N T H   R+
Sbjct: 52  EIWETRDGLFEEPVGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTWHTTLRN 105


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 223 KEICCFNSPVIK 188
           K ICCFNSP +K
Sbjct: 135 KAICCFNSPSLK 146


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 383 SLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISN 502
           +L  P + +  G K         S LP+ PIP   P+++N
Sbjct: 666 TLDQPTSLLVLGCKAKNVSELILSYLPEKPIPDGAPIVTN 705


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 267 FESDALKGKVGNSISKKFAVLIALLLRILKYYQNH*HLHSNTIYLSRQQFNQKKK 103
           +E DA+   V    +K+ A  +AL++  L YY  H HL ++ I LS  Q +  K+
Sbjct: 362 YERDAIF-IVDEGNAKEAASCLALMILCL-YYDLHMHLLAHPISLSASQSHLTKQ 414


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 205  NSPVIKNIEILPKPLTPTLKHYLS 134
            N PV  N E +P  LTP +++ +S
Sbjct: 3521 NQPVFHNTEAVPFRLTPPIQYLIS 3544


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 374 VEYSLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNN 505
           ++Y+  L   S  +  + + T S  S S P+LP P++ P++  N
Sbjct: 94  IDYNEALQIRSADENQQSVPTVSIASPSTPELP-PSSSPLLPPN 136


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 235 KLHFKEICCFNSPVIKNIEILPKPLTPTLKHYLS 134
           KLH  E+   N  ++ + E L + ++P ++ YLS
Sbjct: 880 KLHLLELLFMNGLLLPDSEQLSEHVSPDMQSYLS 913


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 176 YFNILNNRAIKTANFFEMEFPTLPFNASDSNDY 274
           Y N+LNN         E+   T+   A DS+ Y
Sbjct: 452 YTNVLNNHCKNLEKLIELVETTIDLEALDSHQY 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,401
Number of Sequences: 5004
Number of extensions: 44834
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)