Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6j16
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35595-3|CAA84641.1| 215|Caenorhabditis elegans Hypothetical pr... 36 0.027
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 28 4.2
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 4.2
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 28 5.5
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 28 5.5
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 27 9.6
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 27 9.6
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 27 9.6
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 27 9.6
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 27 9.6
>Z35595-3|CAA84641.1| 215|Caenorhabditis elegans Hypothetical
protein C01G6.2 protein.
Length = 215
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -3
Query: 196 VIKNIEILP--KPLTPTLKHYLSVQTTI*SEKKEKNRTQILYVDII 65
V++N+E+L P TPT KH L ++T + + KK +N+ ++ + ++
Sbjct: 125 VLQNLEVLEWLPPTTPTTKHLLELETIVSTRKKVQNQLVVVRLQVL 170
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 434 TQSYTSSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGGEEGPS 577
T+ TSS+ P++ + A P S+ +H + S ++ GE+ PS
Sbjct: 148 TEEPTSSAQPEVVVTAPSPTPSSKKSHSKVSSLSGSKTSLASGEKAPS 195
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 434 TQSYTSSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGGEEGPS 577
T+ TSS+ P++ + A P S+ +H + S ++ GE+ PS
Sbjct: 148 TEEPTSSAQPEVVVTAPSPTPSSKKSHSKVSSLSGSKTSLASGEKAPS 195
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 467 LPIPANVPVISNNTTHERRRHSSKVSGIMSGGEEGPS 577
LP P +V V + N H+ ++ +S SGGEEG S
Sbjct: 573 LPSPPSVRVSTQN--HQNQQRTSSFDESSSGGEEGGS 607
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 467 LPIPANVPVISNNTTHERRRHSSKVSGIMSGGEEGPS 577
LP P +V V + N H+ ++ +S SGGEEG S
Sbjct: 573 LPSPPSVRVSTQN--HQNQQRTSSFDESSSGGEEGGS 607
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 467 LPIPANVPVISNNTTHERRRHSSKVSGIMSGGEEGPS 577
LP P +V V + N H+ ++ +S SGGEEG S
Sbjct: 6 LPSPPSVRVSTQN--HQNQQRTSSFDESSSGGEEGGS 40
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 458 LPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGG 562
LP LP+P VP+ ++ +T + K +G GG
Sbjct: 987 LPSLPLPLPVPITTSASTTNLEETTGKENGREGGG 1021
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 246 PLMRQIQMTIQDLLKSHCQAQKTTVNGAVHQDPSRDV 356
PL+ Q+Q TI + LK HC + + V DV
Sbjct: 520 PLVDQVQSTIINALKDHCSGSQNKLAKIVRLTQEFDV 556
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 246 PLMRQIQMTIQDLLKSHCQAQKTTVNGAVHQDPSRDV 356
PL+ Q+Q TI + LK HC + + V DV
Sbjct: 364 PLVDQVQSTIINALKDHCSGSQNKLAKIVRLTQEFDV 400
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 246 PLMRQIQMTIQDLLKSHCQAQKTTVNGAVHQDPSRDV 356
PL+ Q+Q TI + LK HC + + V DV
Sbjct: 520 PLVDQVQSTIINALKDHCSGSQNKLAKIVRLTQEFDV 556
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 246 PLMRQIQMTIQDLLKSHCQAQKTTVNGAVHQDPSRDV 356
PL+ Q+Q TI + LK HC + + V DV
Sbjct: 370 PLVDQVQSTIINALKDHCSGSQNKLAKIVRLTQEFDV 406
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 246 PLMRQIQMTIQDLLKSHCQAQKTTVNGAVHQDPSRDV 356
PL+ Q+Q TI + LK HC + + V DV
Sbjct: 520 PLVDQVQSTIINALKDHCSGSQNKLAKIVRLTQEFDV 556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,713
Number of Sequences: 27780
Number of extensions: 248737
Number of successful extensions: 735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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