Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j14
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    30   0.25 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.57 
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.99 
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    28   0.99 
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    27   1.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   2.3  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.0  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   4.0  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.0  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   9.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.2  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 442 SIAVISIMENVSIRSWFVNPKSFVFLHHSL 353
           SI+ IS++  + + +WF +P+S   LH +L
Sbjct: 263 SISFISVIMGIDLGTWFASPESLSHLHDNL 292


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 164 SYDPEKYVLDNVSSTVLTDESL-TPGRPPCLTQRTIGKFLQPLTRELAEIP 313
           S DP+KY+ + V ST     SL  P  PP   +       QP+  +  E+P
Sbjct: 188 SSDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDSQPMELDEPELP 238


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 128 PTDPRSNISKLGSYDPEKYVLDNVSSTVLTDESLTPGRPPCLTQ--RTIGKFLQPLTREL 301
           P  PRS++  L  Y   K +LD+  ST+   E+   G    L +  RTI   + P  ++ 
Sbjct: 738 PHPPRSDLEALKLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITINPTLKQK 797

Query: 302 AEIPPKPTI 328
            +  P+  +
Sbjct: 798 EDSMPRSAL 806


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 74  FLRSNYLQYFVKMETTNHPTDPRSNISKLGSYDPEKY-VLDNVSSTVLT 217
           + +S Y    + +ET N P     ++ +L  YD + Y +++ +SS+V T
Sbjct: 196 YTQSQYASVVIGIETVNEPLGYGLDMDQLKQYDLDAYNIVNPLSSSVAT 244


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 482 FPRSYQYDLDCIKYRRDHACDGLKQKHSNKPIRAQCRDCTKLN 610
           FP+SY  D+D I+Y R +    LK + +   +++   D  K N
Sbjct: 18  FPKSY--DIDEIEYERINQLSKLKLEDARADLQSSMEDSNKAN 58


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 394 FVNPKSFVFLHHSLYHRTRQFIDSRLGRYFGKFSR 290
           ++NP+ F+F   SL+      I S LGR FG  SR
Sbjct: 546 YINPRFFLF--DSLFEVIISIILSFLGRAFGSISR 578


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 532 IATIFYTIQVVLIRTRKYILMMWYNSFSRHS--IAVISIMENVSIRSWFVNPKSFVFLHH 359
           + TI    ++ L+   K I ++  N++  H   I VIS +      S   N    V    
Sbjct: 431 LRTIGVVTKMDLVPPSKAISILHNNNYPLHYGYIGVISRIVPTGRFSAGQNLTDLVSTQE 490

Query: 358 SLYHRT-RQFIDSRLGRYFG 302
           + Y  T +QF D+R+G Y G
Sbjct: 491 NSYFSTHQQFADARIGNYLG 510


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 370 FLHHSLYHRTRQFIDSRLGRY 308
           FLH+ LYH++ + I  ++ RY
Sbjct: 130 FLHNKLYHKSVRIIPLKIDRY 150


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 269 QLSSGLNKEVGLGLSFHQSILSMKHCPRRIFRGHMNL 159
           QLS    K++G      QSILS+   P  +F GH +L
Sbjct: 275 QLSLDGTKDLGPKF-LEQSILSIPDIPEDVFAGHNSL 310


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 560 VFVLIHRKHDRDDILYNPGRIDTNEEIHLDDV 465
           V    +R +  D+ L  PGRID   E  L D+
Sbjct: 321 VLFATNRPNTLDEALMRPGRIDRKVEFGLPDL 352


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 267 LENFYSHSRENLPKYRPSLLSMN 335
           L  FY HS   L +YRP  L  N
Sbjct: 587 LSPFYYHSLAGLGEYRPKQLKFN 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,611
Number of Sequences: 5004
Number of extensions: 64217
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)