Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j14
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    30   1.2  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.6  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.6  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    30   1.6  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    27   8.6  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    27   8.6  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    27   8.6  

>U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical
           protein C04E6.4 protein.
          Length = 387

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 457 CYTTSSRCISSFVSIRPGLYKISSRSCLRWIKTKT**QANTCSMPRLYQIKCAQD*VHFN 636
           CY   +     F  I   +Y IS   C+  +KT+T  QA   ++  L  IKC  D ++ N
Sbjct: 81  CYCVQNEAFWDFSEIMSTVYTISRDKCVGSVKTETFDQAGNSNL-GLKNIKCTLDALYKN 139


>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 437 YGMTTETVIPHHQDVFPRSYQYDLDCIKYRR 529
           YGM   T++P+HQ   P +Y Y+ + ++ ++
Sbjct: 174 YGMINRTIVPYHQIWIPDTYLYNSEELEQKK 204


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 431 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 532
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 431 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 532
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 431 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 532
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = -3

Query: 559 FLF*SIASMIATIFYTIQVVLIRTRKYILM------MWYNSFSRHSIAVIS-IMENVSIR 401
           F F +++ +  T+  +    ++  + YI++      +   SF +HS+AVIS IM+N+   
Sbjct: 197 FFFLTLSIIFGTVILSTSYYILYAQLYIMLKSIKTRISNRSFKKHSVAVISTIMQNLVFA 256

Query: 400 SWFVNP 383
            +F+ P
Sbjct: 257 FFFLFP 262


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 188  RRIFRGHMNLIWKYCF*DQLDDLSFPFLRNIADSSSVKKVIFK*FHGLW 42
            +R+ R    +  K+   + + D+    +R + D   VKK++F+ F  LW
Sbjct: 1403 KRVIRIMREICEKFPTFEMIPDMLARMIRRVTDEEGVKKLVFETFTTLW 1451


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +2

Query: 107 KMETTNHPTDPRSNISKLGSYD-PEKYVLDNVSSTVLTDESLTPGRPPCLTQRTIGKFLQ 283
           +M+++++ +D  S+  +  + D  +K + D +  T +  + +    PP L +      L 
Sbjct: 407 RMDSSDYGSDGISDCRESTASDGTQKTLSDRIEVTDIIFDKVKSPTPPPLRKLEQCTELP 466

Query: 284 PLTRELAEIPPKPTIDELPGPVIERMVQKDKAFWVD 391
           P  R++    P P     P P + R     K+  V+
Sbjct: 467 PKPRKMVSRSPSPVNKPPPSPKVSRATSPKKSQQVE 502


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 142 SRISWMICRFHFYEILQIVRA*KKLFLNNF 53
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 142 SRISWMICRFHFYEILQIVRA*KKLFLNNF 53
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 142 SRISWMICRFHFYEILQIVRA*KKLFLNNF 53
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,676
Number of Sequences: 27780
Number of extensions: 355297
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)