Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j12
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfi...    40   0.002
U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfi...    40   0.002
U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfi...    40   0.002

>U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform b protein.
          Length = 437

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   DYNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPARDEL 131
           DY G+RT+ G TKF+ET+G+         + EEE D     EL
Sbjct: 395 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEEEADEEGHTEL 437


>U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform c protein.
          Length = 371

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   DYNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPARDEL 131
           DY G+RT+ G TKF+ET+G+         + EEE D     EL
Sbjct: 329 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEEEADEEGHTEL 371


>U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform a protein.
          Length = 493

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   DYNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPARDEL 131
           DY G+RT+ G TKF+ET+G+         + EEE D     EL
Sbjct: 451 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEEEADEEGHTEL 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,927
Number of Sequences: 27780
Number of extensions: 262782
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)