Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6j08
         (106 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   7.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 10  IPDSILDAFLKYNYHHK 60
           +  S++   L  NYHH+
Sbjct: 305 VASSVVSTILILNYHHR 321


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   TKRIPDSILDAFLKY 45
           T R+P  I   FLKY
Sbjct: 327 THRMPQLIRKIFLKY 341


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 7   RIPDSILDAFLKYNYHHKITIKD 75
           RI   I+D +  Y  H K   KD
Sbjct: 420 RIYKRIIDYYHSYKMHQKPYNKD 442


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 7   RIPDSILDAFLKYNYHHKITIKD 75
           RI   I+D +  Y  H K   KD
Sbjct: 420 RIYKRIIDYYHSYKMHQKPYNKD 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,159
Number of Sequences: 438
Number of extensions: 245
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)