Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i19
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    36   0.020
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    31   0.57 
U55365-6|AAN84868.1|  338|Caenorhabditis elegans Nuclear hormone...    30   1.3  
AY204182-1|AAO39186.1|  338|Caenorhabditis elegans nuclear recep...    30   1.3  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.0  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    29   3.0  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode ast...    29   4.0  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    28   7.0  
Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical...    27   9.2  

>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform a protein.
          Length = 1702

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 485 IPCGPNPPCVSPKQTQ-NEPKCPPPSFKNPSVKHSCGPD--NQCVTRGSNAKV 634
           +P  P+ P  S  ++Q    K  P +FK   ++HS  PD  N+CV+  SNA +
Sbjct: 620 VPMNPSLPVSSHSESQVRSTKKLPSNFKEDDIRHSTCPDNCNKCVSEKSNADI 672


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +2

Query: 491 CGPNP---PCVSPKQTQNEPKCPPPSFKNPS----VKHSCGPDNQC 607
           CGP+P   PC  P      P CPPP    PS     K +  P+N C
Sbjct: 100 CGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPC 145


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 116 MNRTCNSKVK-NPCK-ICMQTVCNKNGLQCQGVC 211
           +NR C S  K  PCK +C  T CN+    C  VC
Sbjct: 366 INRRCRSNEKFEPCKTVCSDTKCNEEPRFCPQVC 399


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 116 MNRTCNSKVK-NPCK-ICMQTVCNKNGLQCQGVC 211
           +NR C S  K  PCK +C  T CN+    C  VC
Sbjct: 471 INRRCRSNEKFEPCKTVCSDTKCNEEPRFCPQVC 504


>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
            ZK593.4 protein.
          Length = 1477

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 185  NGLQCQGVCKRWAHYACLKYTPGKIQDI 268
            N + C+  CK W H  CL +T  +I D+
Sbjct: 1428 NWVMCEAGCKNWFHVICLGFTLREINDM 1455


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 107 ENKMNRTCNSKVKNPCKICMQTVCNKNGLQCQGVCKRWAHYAC 235
           E ++N+  ++K  + C IC  T+ +KNG      C++W H  C
Sbjct: 227 EPEINQKKDTKQVHVCPIC--TLASKNGTCLCTKCQKWVHLKC 267


>U55365-6|AAN84868.1|  338|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 94, isoform a protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 104 NENKMNRTCNSKVKN-PCKICMQTVCNKNGLQCQGVCKRWAH 226
           N  K  + CN + +  PC+ C   +C KNG+    V ++  H
Sbjct: 32  NSPKQLKKCNCEAERAPCRYCRMKMCVKNGMMITKVQQKRDH 73


>AY204182-1|AAO39186.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-94 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 104 NENKMNRTCNSKVKN-PCKICMQTVCNKNGLQCQGVCKRWAH 226
           N  K  + CN + +  PC+ C   +C KNG+    V ++  H
Sbjct: 32  NSPKQLKKCNCEAERAPCRYCRMKMCVKNGMMITKVQQKRDH 73


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 485 IPCGPNPPCVSPKQTQNEPKCPPPS--FKNPSVKH 583
           +P  P+    +P+Q Q +P  PPP   +++P+ +H
Sbjct: 30  VPPAPDASMPTPQQQQQQPNLPPPQQPYEHPAQQH 64


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 491 CGPNPPCVSPKQTQNEPKCPPPSFKNPS 574
           C P P C  P      P CPPP    PS
Sbjct: 56  CPPPPMCPPPPPPPPPPMCPPPPPPMPS 83



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 485 IPCGPNPPCVSPKQTQNEPKCPPP 556
           +PC P PP   P+     P CPPP
Sbjct: 43  LPCPP-PPICPPQFCPPPPMCPPP 65


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 488 PCGPNPPCVSPKQTQNEPKCPPPS 559
           P    PP  SPK  +N+P  P PS
Sbjct: 256 PSSKQPPKKSPKSNKNDPNAPGPS 279


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 124 SVHFIFISNIKFTFVWLAFCKLC 56
           S+H+  +SNI+ TF ++ FC  C
Sbjct: 102 SLHYFCMSNIRMTFSFVYFCFFC 124


>AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode
           astacin protease protein30 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 113 KMNRTCNSKVKNPCKICMQTVCNKNGLQCQGVCKRW 220
           K  RTCN KVK+P    ++ V  +   QC   CK +
Sbjct: 486 KGKRTCNWKVKSPSGGRVRLVLTELRYQCAPACKAY 521


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 482 NIPCGPNPPCVSPKQTQNEPK-CPPPSFKNPSV--KHS 586
           ++PC P PP +S ++    PK C  P+ KN S   KHS
Sbjct: 183 SLPCPPPPPPLSERKKNVGPKPCVGPAQKNLSSQRKHS 220


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 68  KCQPNESKF-NV*NENKMNRTCNSKVKNPCKICMQTVCNKNGLQ 196
           KC+  E +F N  N N+  +  +      C IC QT+  +N LQ
Sbjct: 211 KCEICEKQFANKPNLNRHRKIHSGTKSKKCNICQQTLHRENRLQ 254


>Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical
           protein C09G9.4 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 488 PCGPNP-PCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGSNAKVQQNEAKTK 658
           P  P P P  SP   + E K P P   N S +H    +NQ  T     ++QQ   + K
Sbjct: 56  PPPPEPKPQRSPPDREKESKDPQPMNNNRSKEHVLRSENQAPTN----EIQQRSDRQK 109


>AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical
           protein Y38E10A.22 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +2

Query: 488 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGSNAKVQQNEAKTKSRI 667
           P  P PPC    +   EPK  P   K  + K     D +        ++++++ + +  I
Sbjct: 209 PQPPQPPCHKANKNA-EPKKEPEPAKKVAPKQETKVDQEAAELARKIQIEEDKTRKRHEI 267

Query: 668 V 670
           V
Sbjct: 268 V 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,417
Number of Sequences: 27780
Number of extensions: 364847
Number of successful extensions: 1250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)