Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i17
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.80 
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    27   1.8  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   5.6  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    26   5.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.6  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   7.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 200 TSLIVFENITKNLKLLRHCAYCNLNY--LTQKVSIQSHTITLL 78
           T+L VFE+   N K L+ C    LNY  L Q + I++H +  L
Sbjct: 508 TALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVRFL 550


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 250 QLLWKRNDNLRDIYCIILLCFLKQKRS 330
           +LL  + D L+D  C+++ C+L++ R+
Sbjct: 86  KLLKPKADELQDALCVVMRCYLEKPRT 112


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 276 FKRHILHNITMLFKAKTILSTQDLQDKINQLHVN 377
           F ++   ++ +L + + +  T DL+D+I  LH+N
Sbjct: 121 FSQYRESHLKLLNELQNVKDTNDLKDRIRLLHLN 154


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 387 MNLNPSYERLKISAMNKIEQILHESTRKNLQ 479
           MN+N   ++L+I++   IE +L E   KN++
Sbjct: 10  MNVNLKKKQLQITSSEIIEHVLEELNLKNIE 40


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 381  LPMNLNPSYERLKISAMNKIEQILHESTRKNLQEVDFEELLLCVLTILYFF 533
            +P+++  S+ RL  + MN    ++H+S +KN    D E L +   T  + F
Sbjct: 1201 VPIHVVQSFCRLLTTWMNP--NLMHDSNKKNSSLTDAERLFVKATTKHFVF 1249


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
 Frame = +3

Query: 354 KINQLHVNYLPMNLNPSYERLKISAMNKIEQ-------ILHEST----RKNLQEVD---- 488
           KI Q+  +  P      YE+  +S +++ ++       IL++      RK+LQ++     
Sbjct: 369 KIEQVSESLFPRRFREMYEKAYVSKLSEQKKGNGTQKAILNDEQKELYRKDLQKLGISIL 428

Query: 489 --FEELLLCVLTILYFFGMRLKINNLKSRN 572
             F  +L+C+  I Y F +R+  ++ K  N
Sbjct: 429 FVFFIILVCLAVIFYVFNIRIHWSDFKELN 458


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 665 GDFTSFWA*IVYSVLENCFSPNK 597
           G+FT  ++ ++Y VL + F PNK
Sbjct: 496 GNFTGLFSGLIYIVLISYFFPNK 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,242
Number of Sequences: 5004
Number of extensions: 48965
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)