Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6i17
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 31 0.83
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497 31 1.1
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 31 1.1
02_05_0557 + 29946273-29946497,29946899-29947465,29947898-299479... 31 1.1
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243... 30 1.5
02_04_0573 + 23985468-23987054 28 5.9
07_03_1261 + 25266976-25267169,25267275-25268235,25268335-252684... 28 7.7
01_05_0220 - 19434011-19434802 28 7.7
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 276 FKRHILHNITMLFKAKTILSTQDLQDKINQLHVNYLPMNLN---PSYERLKISAMNKIEQ 446
F++H+L I LF+ K + D +N + N L + N PS ++ + + +
Sbjct: 1228 FRKHVLEQIFALFRVKLCIFQIFSFDLVNVWNYNTLTVYFNQLPPSSKQDHAAKLQLCSK 1287
Query: 447 ILHESTRKNLQEVDFEELLLCVL 515
L TR N +E ELL+ +L
Sbjct: 1288 YLENFTRANEKEKVNSELLVDLL 1310
>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
Length = 800
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 474 LQEVD--FEELLLCVLTILYFFGMRLKINNLKSRNWNWCLKRNF 599
L EVD F + LC F L +N + RNW+WCL R+F
Sbjct: 285 LMEVDTKFTAMYLC------FRDPMLVLNAIPPRNWSWCLIRDF 322
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 474 LQEVD--FEELLLCVLTILYFFGMRLKINNLKSRNWNWCLKRNF 599
L EVD F + LC F L IN + RNW+WCL R++
Sbjct: 410 LMEVDTKFTTMYLC------FRDPLLIINAIPPRNWSWCLSRDY 447
>02_05_0557 +
29946273-29946497,29946899-29947465,29947898-29947961,
29948400-29948480,29948604-29948818,29948936-29949106
Length = 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 474 LQEVD--FEELLLCVLTILYFFGMRLKINNLKSRNWNWCLKRNF 599
L EVD F + LC F L IN + RNW+WCL R++
Sbjct: 158 LMEVDTKFTTMYLC------FRDPLLIINAIPPRNWSWCLSRDY 195
>11_06_0655 -
25923171-25923185,25923208-25923432,25923865-25924324,
25924330-25924985
Length = 451
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 444 QILHESTRKNLQEVDFEELLLC--VLTILY--FFGMRLKINNLKSRNWNWCLKRNF 599
Q+ + K++ + ++ EL+ + T +Y F L IN + RNW+WCL R +
Sbjct: 248 QLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAY 303
>02_04_0573 + 23985468-23987054
Length = 528
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 361 LILSCKSWVLKIVFALKSIVILCSICLLNYHFVSIVAVRNNSVFSSNYLNQSTQHL 194
L LS S V +I L + L S+CL N F + ++ NYL+ HL
Sbjct: 149 LDLSSNSLVGEIPTKLGLLTNLSSLCLSNNSFTGTIPPTLGNITGLNYLSLQINHL 204
>07_03_1261 +
25266976-25267169,25267275-25268235,25268335-25268430,
25269154-25269290,25269394-25269601
Length = 531
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 343 SWVLKIVFALKSIVILCSICLL 278
+WV+ V+ L S +LC+IC+L
Sbjct: 433 AWVIPAVWELISFFLLCTICIL 454
>01_05_0220 - 19434011-19434802
Length = 263
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 321 KTILSTQDLQDKINQLHVNYLPMNLNPSYER 413
+T + +Q+K+++ HV P+ + PSY R
Sbjct: 4 ETRIRLMGIQNKLDECHVGKAPLEVGPSYVR 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,750
Number of Sequences: 37544
Number of extensions: 236362
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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