Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i17
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical ...    31   0.98 
U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical ...    30   1.7  
U80815-1|AAB37996.2|  100|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL117204-14|CAB55155.1|  264|Caenorhabditis elegans Hypothetical...    28   5.2  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   6.9  
Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.5 protein.
          Length = 292

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 279 KRHILHNITMLFKAKTILSTQDLQDKINQLHVNYLPMNLNPSYERLKISAMNKIEQILHE 458
           KR ++H  + + K K+  S  +  +KIN+  +N     +   ++R++ S   K +Q+  E
Sbjct: 167 KRRVMHIQSNILKYKSETSVIEGAEKINEQLLNMKLKEIKDHFDRIRQSTGEKEKQLTDE 226

Query: 459 STRK--NLQEVD 488
            T +   ++E+D
Sbjct: 227 LTARATKIREMD 238


>U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical
           protein C39D10.2 protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 167 NLKLLRHCAYCNLNYLTQKVSIQSHTITLLTL--VYKYVGTSYFILFLNI 24
           N++ L +   C +  L +   I S+TI  LT   ++KY   SYF +F N+
Sbjct: 40  NMRRLPYFTCCQI--LDKGSQIHSYTILSLTFFRIFKYFFVSYFSIFFNV 87


>AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical
           protein F41B5.10 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 291 LHNITMLFKAKTILSTQDLQDKI-NQLHVNYLPMNLNPSYERLKISAMNKIEQILHESTR 467
           LH+         +  T  LQ+ I NQLH +YL +   P+Y   +++ M K+  ++    R
Sbjct: 310 LHHAGKKLHGDMLELTDYLQEVISNQLHNHYLNVRKMPNYS-ARLARMMKVNNLMRTDLR 368

Query: 468 KNLQEV 485
           +  ++V
Sbjct: 369 RQSEKV 374


>U80815-1|AAB37996.2|  100|Caenorhabditis elegans Hypothetical
           protein W02C12.2 protein.
          Length = 100

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 358 ILSCKSWVLKIVFALKSIVILCSICLLNYHFVSIVAVRNNSVF 230
           +L+C   ++  +FA KS +IL      N H+ +++A    S+F
Sbjct: 15  VLACFDTLIVAIFAYKSFIILMETMNHNLHWTTVIAFLFFSMF 57


>AL117204-14|CAB55155.1|  264|Caenorhabditis elegans Hypothetical
           protein Y116A8C.23 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 110 VSIQSHTITLLTLVYKYVGTSYFILF--LNIST 18
           +SI SH   LL  ++ + GT  F+LF  +NIST
Sbjct: 85  LSIMSHVSGLLVPLFLFSGTGSFVLFFLVNIST 117


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -1

Query: 349 CKSWVLKIVFALKSIVILCSICLLNYHFVSIVAVRNNSVFSSNYLNQS 206
           C+ W+    F    I   C++C L + F  ++A    S  + ++ N +
Sbjct: 822 CRIWIATFFFVSLIIACYCTLC-LEFGFNQVMAFSETSYLTKHFQNMN 868


>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 367 SWLILSCKSWVLKIVFALKSIVILCSICLLN--YHFV 263
           SWL ++CK W    +  + SIV   S    N  Y F+
Sbjct: 362 SWLCMNCKDWTALKIDQMSSIVFPVSFLAFNIWYWFI 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,913
Number of Sequences: 27780
Number of extensions: 259829
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)