Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i14
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    35   0.003
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   0.38 
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    25   2.0  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    25   2.7  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   2.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   3.6  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    24   6.3  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    24   6.3  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    23   8.3  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    23   8.3  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 15  DWDIFYWIVEKKPTPKEF-DNEIMNLLKKHAKNEDKIALRQPDL 143
           DWDI YW   ++  P+++  +++   L K+ +++    LR P+L
Sbjct: 95  DWDILYWCSGEREAPEKWKSSQVFKELSKYCRSQRNHTLRMPEL 138


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 140 IGLSECNFIFIFSMFFEKIHNFIVK 66
           IGLS  NF+  FS FFE I +F++K
Sbjct: 288 IGLS--NFVNSFSSFFELISHFLIK 310


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 186 RNKFILLTLHFRFNVDRVVGVQFY 115
           R+KF+L++L    N+  ++G+Q Y
Sbjct: 16  RSKFVLISLILLLNLGLLLGIQIY 39


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   SPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNED 116
           S +++ +IF W  +++   +E DNE +N  KK +  ED
Sbjct: 226 SGNDEEEIFSW-GDERSDEEESDNEQVNDEKKQSSEED 262


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  TPKEFDNEIMNLLKKHAKNEDKIALRQPDLH*NE 155
           TP+E D +   ++K  +K ED+  LRQ +L   E
Sbjct: 123 TPEELDYQ--QIMKSLSKQEDQSPLRQDELERKE 154


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 134 LSECNFIFIFSMFFEKIHNFIVKFFRSWL 48
           +S+ N+ +I + FF    N  V  F  WL
Sbjct: 309 VSDMNWAYIIASFFRTCLNDFVSVFPEWL 337


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 88  FSKNMLKMKIKLHSDNPIY 144
           FSKN+ + K   H+ NP+Y
Sbjct: 313 FSKNIFRTKWLRHNLNPVY 331


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 36  IVEKKPTPKEFDNEIMNLLKKHAK 107
           +VEKK T K+FD  + +L +K  +
Sbjct: 40  VVEKKSTDKDFDTFLGDLPEKDCR 63


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 27  FYWIVEKKPTPKEFDNEIMNLLKKH 101
           F+ +V    TPKE   E +N LK+H
Sbjct: 333 FHIVVRNVITPKEKVVEALNSLKEH 357


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 104 SMFFEKIHNFIVKFFRSWLLFNYPIEYVPIVAG 6
           S + E +  F+  F     +FN+ + +V +VAG
Sbjct: 275 SEYLEFVATFMALFMIGLGIFNFCLAFVSVVAG 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 974,660
Number of Sequences: 5004
Number of extensions: 16466
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)