Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i14
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.66 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   1.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   2.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 222  EQQATNAIITNQRNKFILLTLHFR 151
            +QQ    I+TNQ  K IL T + +
Sbjct: 983  QQQQQQTIVTNQAGKSILQTANIK 1006


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 45  KKPTPKEFDNEI--MNLLKKHAKNEDKIALRQPD 140
           +KP  +E +  I     + +HAKN+DK    + D
Sbjct: 505 EKPLVREIEKTIDDARFIAQHAKNKDKFESVEED 538


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 246 YFFIK*NTEQQATNAIITNQRNKFILLTLHFRFNV 142
           YF    N  Q+ +N IIT   N FI+ T+   F +
Sbjct: 19  YFVSAYNLNQEDSNWIIT---NSFIIFTMQTGFGM 50


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 139 SGCRSAILSSFLACFLRRFIISLS 68
           +G  + ++  F+AC+L  FI+ L+
Sbjct: 305 AGTLAVVVGGFVACWLPFFILYLA 328


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 47  LFNYPIEYVP 18
           LF +PI++VP
Sbjct: 309 LFEFPIKFVP 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,158
Number of Sequences: 438
Number of extensions: 1064
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)