Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6i10
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 157 8e-39
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828... 118 3e-27
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 71 1e-12
07_01_0234 + 1715338-1718233,1718351-1718760 29 4.8
06_03_0017 - 15465831-15466043,15466091-15466249,15466664-154669... 29 4.8
06_01_0454 - 3234331-3236299,3237254-3238074 28 6.4
11_01_0775 - 6470546-6470985,6471136-6471523 28 8.4
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 157 bits (381), Expect = 8e-39
Identities = 80/196 (40%), Positives = 115/196 (58%), Gaps = 5/196 (2%)
Frame = +1
Query: 133 MTQFIDKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELF 312
M F+ K K LDAY K EDF + M+LLF+SE +Y +L
Sbjct: 1 MEGFLQKLKGLDAYPKVNEDFYKRTLSGGVVTVVASVVMLLLFVSETRSYFYSATETKLV 60
Query: 313 VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEEPK 492
VDTSRG +LR+N D+ P++ C L +D MD SGEQH + +I KRRLD GN I E +
Sbjct: 61 VDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAHGNVI-EAR 119
Query: 493 KEEISTA---STLKQNNSEIA--TLTCGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPH 657
KE I A S L+++ ++ CG+CYGA ++ QCCN+C++V+EAY+ + WAL +
Sbjct: 120 KEGIGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEEVREAYKKKGWALTN 179
Query: 658 LSTIEQCKNDESVEKL 705
I+QC ++ VE++
Sbjct: 180 PDLIDQCTREDFVERV 195
>04_04_0097 -
22782031-22782122,22782504-22782570,22782769-22782861,
22782981-22783034,22783163-22783214,22783346-22783413,
22783532-22783711,22783843-22783935,22784585-22784665,
22785011-22785091,22785204-22785331,22786502-22786643
Length = 376
Score = 118 bits (285), Expect = 3e-27
Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 4/195 (2%)
Frame = +1
Query: 133 MTQFIDKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELF 312
M + K + LDAY K EDF + M+LLF+SEL L+
Sbjct: 1 MEGLLSKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRHTLTYTF----- 55
Query: 313 VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAI--EE 486
G L++ D+ P + C+ + LDAMD SG++HL ++ +I K+R+D+ GN I ++
Sbjct: 56 -----GMILKMQFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVHGNVIATKQ 110
Query: 487 PKKEEISTASTLKQNNSEIA--TLTCGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPHL 660
+ L+++ + CGSCYGA ++ QCCN+C+DV+EAYR + W + +
Sbjct: 111 DAVGGMKVEQPLQRHGGRLEHNETYCGSCYGAEESDEQCCNSCEDVREAYRKKGWGVSNP 170
Query: 661 STIEQCKNDESVEKL 705
I+QCK + ++ +
Sbjct: 171 DLIDQCKREGFLQSI 185
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 70.5 bits (165), Expect = 1e-12
Identities = 25/50 (50%), Positives = 39/50 (78%)
Frame = +1
Query: 556 CGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPHLSTIEQCKNDESVEKL 705
CGSCYG+ ++ QCCN+C+DV++AYR + WAL ++ I+QCK + V++L
Sbjct: 195 CGSCYGSEESDDQCCNSCEDVRDAYRKKGWALTNIEEIDQCKREGFVQRL 244
Score = 58.4 bits (135), Expect = 5e-09
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Frame = +1
Query: 148 DKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPN------ISEEL 309
+K + LDAY K EDF + ++LLF+SE+ ++ I +
Sbjct: 5 NKLRSLDAYPKVNEDFYSRTLSGGLITIASSLAILLLFLSEILGVITCQSVGICFILQGC 64
Query: 310 F-VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEE 486
F VD + L D+ P + C+ + +D MD SGEQH + +I K+R+D GN IE
Sbjct: 65 FCVDLGCIYILLQIFDVTFPALPCSLVAVDTMDVSGEQHYDIRHDIIKKRIDNLGNVIES 124
Query: 487 PK 492
K
Sbjct: 125 RK 126
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +1
Query: 259 FMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPTISC-NYLVL--DAMDSSGEQHLQ 429
F L Y+ N S +L + + G++L + + +S N L L + M + + +
Sbjct: 445 FTGNLPDYMG-NFSNQLVIFFAFGNQLTGGIPASLSNLSALNLLDLSNNQMSNIIPESIM 503
Query: 430 MEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQ 528
M +N+ R LD GN++ P EIS ++L++
Sbjct: 504 MLKNL--RMLDFSGNSLSGPIPTEISALNSLER 534
>06_03_0017 -
15465831-15466043,15466091-15466249,15466664-15466968,
15467083-15467324,15467818-15467825,15467954-15468418,
15468465-15468763,15468968-15469204,15469297-15469519
Length = 716
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 421 HLQMEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQNNSEIATLTCGSCYGAAFNESQCC 600
H E + +LDL +++ +K T L+ + +TC C G + ++C
Sbjct: 2 HTVKETELLAAKLDLLMKRLDDHEKRPQGTVKALESH------VTCEVCGGTGHSGNECP 55
Query: 601 NTCDDV 618
TC++V
Sbjct: 56 ETCEEV 61
>06_01_0454 - 3234331-3236299,3237254-3238074
Length = 929
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 319 TSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEE 486
T R H + +N I+ ++ N+L L +D SG LQ RRL L GN +E
Sbjct: 492 TCRVHDVILNF-IVSKSVEENFLFL--LDPSGLVPLQHSNYCKVRRLSLQGNYCQE 544
>11_01_0775 - 6470546-6470985,6471136-6471523
Length = 275
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Frame = +1
Query: 421 HLQMEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQNNSEIATLTCGSCYGAAFNESQCC 600
H E + +LD +++ KK T L + +TC C G + + C
Sbjct: 171 HTVKETELLAAKLDFLMKRLDDHKKRPQGTVKALDSH------VTCEVCGGTGHSGNDCP 224
Query: 601 NTCDDV-----KEAYRL---RRWALPH 657
TC++ YR +RW+ PH
Sbjct: 225 ETCEEAMYMGNNNGYRPQGGQRWSQPH 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,822,160
Number of Sequences: 37544
Number of extensions: 268298
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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