Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i10
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...   137   8e-33
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear recep...    29   4.3  
AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormo...    29   4.3  
AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score =  137 bits (331), Expect = 8e-33
 Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 2/186 (1%)
 Frame = +1

Query: 157 KQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELFVD-TSRGH 333
           K  DAY K ++DFRVK              ++LL + E   +LS  + E LFVD T+   
Sbjct: 8   KHFDAYRKPMDDFRVKTLSGGLVTLIATIAIVLLIVLETKQFLSTEVLEHLFVDSTTSDE 67

Query: 334 KLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDG-NAIEEPKKEEIST 510
           ++ I  DI    + CN++ +D MD S E    +  +I++ RLD +G N  E  +K EI+ 
Sbjct: 68  RVHIEFDITFTKLPCNFITVDVMDVSSEAQENINDDIYRLRLDPEGRNISESAQKIEINQ 127

Query: 511 ASTLKQNNSEIATLTCGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPHLSTIEQCKNDE 690
             T  +    I  + CGSCYGAA  +  CCNTCDDVK AY ++ W + ++  +EQCKND+
Sbjct: 128 NKTSVETTDVIQEVKCGSCYGAA-ADGICCNTCDDVKSAYAVKGWQV-NIEEVEQCKNDK 185

Query: 691 SVEKLN 708
            V++ N
Sbjct: 186 WVKEFN 191


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 550 LTCGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPHLSTIEQCK 681
           L C S  G      +CC  C DVK  Y   +    H+   + CK
Sbjct: 199 LGCLSYLGLKVGAGRCCIFCPDVKARYESVQSCQQHMRDKQHCK 242


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 556 CGSCYGAAFNESQCCNTCDDVKEA 627
           C  C G AFN ++ C  C DV  +
Sbjct: 45  CIECGGTAFNNTELCENCMDVNRS 68


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 556 CGSCYGAAFNESQCCNTCDDVKEA 627
           C  C G AFN ++ C  C DV  +
Sbjct: 45  CIECGGTAFNNTELCENCMDVNRS 68


>AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 490 KKEEISTASTLKQNNSEIATLTCGSCYGAAFNESQCCNTCDDVKEAYR 633
           +KEE+ST+++    +S    + C  C   A  +     +CD  K  +R
Sbjct: 5   EKEEVSTSTSQSPQSSSFENVFCAICGDRATGKHYGAMSCDGCKGFFR 52


>AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform a protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 490 KKEEISTASTLKQNNSEIATLTCGSCYGAAFNESQCCNTCDDVKEAYR 633
           +KEE+ST+++    +S    + C  C   A  +     +CD  K  +R
Sbjct: 48  EKEEVSTSTSQSPQSSSFENVFCAICGDRATGKHYGAMSCDGCKGFFR 95


>AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical
           protein T22H9.4 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = +1

Query: 430 MEQNIHKRRLDLDGNAIE-----EPKKEEISTASTLKQNNS 537
           ++++I KR++ + GN +E      PKKE  +TAS+   ++S
Sbjct: 175 LDRHIKKRKMSIKGNTVEAIAPKSPKKEGSTTASSSSLSSS 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,826
Number of Sequences: 27780
Number of extensions: 263105
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)