Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i10
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 394 DAMDSSGEQHLQMEQNIHKRRL---DLDGNAIEEPKKEEISTASTLKQNNSEIAT 549
           + + +    H Q+ Q+   +R      +G++ +  K EE+S  ST  Q  + +AT
Sbjct: 681 EKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVAT 735


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 418 QHLQ---MEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQNNSE 540
           QH++    E+N+    + LDGN + +      S AS L  N SE
Sbjct: 515 QHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSE 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,864
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)