Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6i08
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 159 4e-40
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 82 7e-17
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 39 9e-04
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 37 0.003
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 29 0.55
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 28 1.3
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 2.9
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 26 6.8
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.8
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 6.8
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 9.0
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 25 9.0
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.0
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 159 bits (386), Expect = 4e-40
Identities = 74/202 (36%), Positives = 121/202 (59%), Gaps = 1/202 (0%)
Frame = +1
Query: 163 IPDTQYSRLDNGLTIATEERESYNTCVGLF-IDAGSRYEDNFENGVGHFFEHLAFKGTKC 339
+P T+ + L NGLT+ATE T L +DAGSR E NG HF EHLAFKGTK
Sbjct: 19 LPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKN 78
Query: 340 RTKTLLEDQISSSGAIFKCFTTREMVAYYADCLSYDLPRVVEILTDCIYNNNFATADIEL 519
R++ LE + ++GA +T+RE YYA +P V +L D + N++ + + +E
Sbjct: 79 RSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVER 138
Query: 520 QRKIVYAEMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVMGPSCNLYNFTDMTISRYLAKR 699
+R+++ E E DK ++ V++D+LH+TA+QG PL +T++GP N+ + T + +Y+
Sbjct: 139 ERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDN 198
Query: 700 FDPARTVLVAVGGVKHDQMVFL 765
+ R ++ + G + H+++V L
Sbjct: 199 YRSDRMIISSAGSISHEELVKL 220
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 82.2 bits (194), Expect = 7e-17
Identities = 47/189 (24%), Positives = 88/189 (46%)
Frame = +1
Query: 169 DTQYSRLDNGLTIATEERESYNTCVGLFIDAGSRYEDNFENGVGHFFEHLAFKGTKCRTK 348
+ + +L NG+T + R + + +G+++ AGSRYE +GV HF + LAF+ T+
Sbjct: 45 EVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPV 104
Query: 349 TLLEDQISSSGAIFKCFTTREMVAYYADCLSYDLPRVVEILTDCIYNNNFATADIELQRK 528
++ ++ + G + C T+RE + Y A + D+ + ++L + + D+ R
Sbjct: 105 GEMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRD 164
Query: 529 IVYAEMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVMGPSCNLYNFTDMTISRYLAKRFDP 708
+ E E + +L ++ H TAFQ L ++ + T +I YL + P
Sbjct: 165 SIIYENSELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRP 224
Query: 709 ARTVLVAVG 735
L G
Sbjct: 225 EHLTLAYAG 233
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 38.7 bits (86), Expect = 9e-04
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 3/140 (2%)
Frame = +1
Query: 196 GLTIATEERESYNTCVGLFIDAGSRYEDNFENGVGHFFEHLAFKGTKCRTKTLLEDQISS 375
G++ A E + + + I+AGSRY+ + GV H E AFK T+ R+ + +
Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQP--DAGVSHLLEKFAFKTTEERSALRITRESEL 87
Query: 376 SGAIFKCFTTREMVAYYADCLSYDLPRVVEILTDCIYNNNFATADIELQRKIVYAEMIEQ 555
G TRE + A L+ L +L + + F +L +++ IE
Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKF--LPFQLTEEVLPTARIES 145
Query: 556 DKNSNTVL---YDYLHSTAF 606
+ +L LH AF
Sbjct: 146 ELFREDILRVAMAKLHEKAF 165
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +1
Query: 160 NIPDTQYS--RLDNGLTIA-TEERESYNTCVGLFIDAGSRYEDNFENGVGHFFEHLAFKG 330
N+ D +Y +L+N L + + E+ N + + GS+ G+ HF EHL F G
Sbjct: 18 NLDDREYRLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMG 77
Query: 331 T-KCRTKTLLEDQISSSGAIFKCFTTREMVAYYADCLSYD 447
T K + + S I +T YY + +S+D
Sbjct: 78 TKKYPDENEYRKYLESHNGISNAYTASNNTNYYFE-VSHD 116
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.55
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Frame = +1
Query: 244 GLFIDAGSRYEDNFENGVGHFFEHLAFKGTKCRTKTLLEDQIS--SSGAIFKC----FTT 405
G F+ A + DN G H EHL F G+K + + + + G I C +T+
Sbjct: 45 GSFVVATEAH-DNL--GCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTS 101
Query: 406 REMVAYYADCLSYDLPRVVE-ILTDCIYNNNFATADIEL-----QRKIVYAEMIEQDKNS 567
E+ A D LP + IL+ + + F T + + +VY+EM +
Sbjct: 102 YELSAAEEDGFLRLLPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSE 161
Query: 568 NTVLYDYLHSTAFQGTP-LAQTVMGPSCNLYNFTDMTISRYLAKRFDPARTVLVAVGGVK 744
V++D + ++ + T G L + I Y + + P+ L+ G +
Sbjct: 162 TDVMFDCMRTSQYPVTSGYYYETGGHPSELRKLSIEKIREYHKEMYVPSNICLIVTGCIN 221
Query: 745 HDQMV 759
+++
Sbjct: 222 ESRLL 226
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 250 TVQRKYCNFPFLQWQLSNHYP 188
TVQR+Y +F FL LSN++P
Sbjct: 240 TVQRRYNDFAFLYQLLSNNHP 260
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.3
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Frame = +1
Query: 148 DFLKNIPDTQYSRLDNGLTIATEERESYNTCVGLFIDAGSRYE-DNF------------- 285
DFLK + RLD G+TI T+ E Y DA DNF
Sbjct: 25 DFLKTGVSQIFERLDEGMTI-TKYMELYTAIHNYCADASKTITVDNFNDQTANVLGEALY 83
Query: 286 ENGVGHFFEHLAFKGTKCRTKTLLEDQISSSGAIFKCFTT 405
N V + E+LA +C ++T E+Q+++ + FTT
Sbjct: 84 NNLVLYLEEYLARLRKECISQTNHEEQLAAYAKYWTRFTT 123
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 445 DLPRVVEILTDCIYNNNFATADIELQRKIVYAEMIEQD---KNSNTVLYDYLHSTAFQGT 615
DL + V I+ C + NF ++++ R ++ + K S T+L D L ++ T
Sbjct: 602 DLHKDVLIVL-CQLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILNDTLPTSIPSYT 660
Query: 616 PLAQTVMGPSCNLY 657
P GP+ N Y
Sbjct: 661 PATHPYAGPAINAY 674
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 475 DCIYNNNFATADIELQRKIVYAEMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVMGPS 645
DC +FA + +K V+AE E+DK L + + + Q V+GPS
Sbjct: 94 DCDEEFDFAANLEKFDKKQVFAEFREKDKKDPAKLLVSHNKSPNRNYHHKQNVLGPS 150
>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 238 KYCNFPFLQWQLSNHYPA*NTEYQEYS 158
K+CN W+ N A N + +EYS
Sbjct: 68 KHCNHKMQAWRFPNEIEAFNDDGEEYS 94
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 329 PLNARCSKKWPTPF-SKLSSYLEPASINSP 243
P + CS P PF SKL ++L P SI SP
Sbjct: 557 PKISSCSST-PKPFNSKLRAHLPPLSIGSP 585
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 154 LKNIPDTQYSRLDNGLTIATEE 219
LK++PD Y R+D +IA +
Sbjct: 661 LKDLPDVHYCRMDGSTSIALRQ 682
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 231 VTFPFFSGNCQTIIQPRILSIRNILKEIYKRNRIWTIPYRSDDW 100
+TFP N + I R+LSI++ + Y NR T P + +W
Sbjct: 1 MTFP----NVKFIGNKRVLSIQSSVSHGYVGNRSATFPLQLHEW 40
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 738 SSNSNENGPRWIESFR*VPRDRHVSEVIQITARSHYGLRERRTL 607
S+ EN P IE F PRD +++ ++ GLR+ L
Sbjct: 425 STEFKENIPDGIEKFVETPRDSEFTDIFPTSSIKVQGLRKETGL 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,987
Number of Sequences: 5004
Number of extensions: 71218
Number of successful extensions: 235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -