Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i08
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.58 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.2  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 552 TRQKFEHCTLRLLAFHSISGYAARANRNGT 641
           T QKF  C +  + FH      + AN N T
Sbjct: 113 TAQKFSRCVIDYVKFHITQYMISNANSNTT 142


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 496 FATADIELQRKIVYAEMIEQDKNS-NTVL 579
           FAT DI+   +I +  M +  KNS N+++
Sbjct: 606 FATKDIKQNEEITFDYMCQSSKNSENSIM 634


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -1

Query: 595 NASNRKVQCSNFCLVRSFPRKQSFSEVRCQPSQSC 491
           N +++     N+  V SFP   +   V+    Q C
Sbjct: 369 NTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKC 403


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 295  VGHFFEHLAFKGTKCRTKTLLEDQISSSGA 384
            +G  +  L  +G +  TK +LED I+SSG+
Sbjct: 1044 LGQLYLDLEVEGFE--TKLVLEDGITSSGS 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,368
Number of Sequences: 438
Number of extensions: 5325
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)