Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i02
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   4.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    23   7.7  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    23   7.7  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 72 SRHTARHSSWHTAGRRTVHLAHDR 1
          + H+ RH   H+  R + H  HDR
Sbjct: 22 TNHSRRHRHHHSRHRESKHGRHDR 45


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 173 ILWLILAFGADIL*FVL*STSSTV 102
           ++W +++F AD+L + L    STV
Sbjct: 716 LIWTVVSFDADVLSWSLPEVPSTV 739


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 152 MPVSTKGSPFKLGSFLL*SNLCDINLKT 235
           +P  T   PF L  ++   NL  +NLKT
Sbjct: 26  IPAKTNPEPFCLREYVGEKNLVIVNLKT 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,077,413
Number of Sequences: 5004
Number of extensions: 18647
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)