Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i02
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097...    28   1.7  
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129...    27   2.2  
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279...    27   2.9  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    27   2.9  
10_08_0275 - 16429689-16429790,16429928-16430137                       26   5.1  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    26   6.7  
11_01_0469 + 3638493-3641166,3641286-3641653                           25   8.9  

>04_04_1155 -
           31308704-31309051,31309301-31309451,31309532-31309763,
           31309854-31310064,31310304-31310422,31310507-31310581,
           31310789-31310990,31311075-31311454,31311569-31311633,
           31311735-31311779,31312166-31312231,31312667-31312741,
           31313022-31313093,31313659-31313727,31313813-31313884,
           31313995-31314066,31314441-31314512,31314597-31314668,
           31315091-31315162,31315279-31315474,31316094-31316202
          Length = 924

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 71  EDTNKRGVMDPQLRKSTKEQTKGYQHQMPVSTKGSP 178
           E+ N  G++DP LR+  + +     H   + T+GSP
Sbjct: 815 ENNNPLGIVDPNLREFNRAEVLRAIHVALLCTQGSP 850


>01_06_0944 +
           33211652-33212427,33212492-33212660,33212825-33212936,
           33213061-33213159,33213237-33213394,33214911-33215062,
           33215162-33215249,33215399-33215476,33215516-33215690,
           33216701-33217002
          Length = 702

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 118 RLPQLWVHHSSLVGILPAYRPAFLLAYRRAPHRA 17
           R P L  +  ++VG +P  RP     +RR  HRA
Sbjct: 643 RQPNLGENDPTIVGKIPGKRPECDRCFRRVDHRA 676


>12_02_0712 +
           22426945-22426981,22427517-22427623,22427707-22427955,
           22429309-22429937,22430013-22430192,22430267-22430555,
           22431183-22431247,22431379-22431471,22431811-22431897,
           22431971-22432071,22432571-22432692
          Length = 652

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  CREDTNKRGVMDPQLRKSTK 124
           CR   NK G +DPQ+  STK
Sbjct: 347 CRTTHNKLGFLDPQIVNSTK 366


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 89  GVMDPQLRKSTKEQTKGYQHQMPVSTKGSPFK 184
           G++DP+L + ++++     H   + T+GSP++
Sbjct: 772 GIVDPRLEEFSRDEVYRVIHVALICTQGSPYQ 803


>10_08_0275 - 16429689-16429790,16429928-16430137
          Length = 103

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 23  VRRPAVCQEECRAVCREDTNKRGVMDPQLRKSTKEQTKGYQHQ 151
           + + A  QEE RAV     + R  + P   ++T  QT+ Y  +
Sbjct: 57  LEKAAAVQEESRAVAWAAFHGRAGLGPVPHRNTNSQTRPYMEE 99


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 120 LKNKLKDISTKCQYQPKDLLLN*VPFCYD 206
           +K KL+D+S  C ++  DL  +    C+D
Sbjct: 703 MKEKLEDVSKGCNFKNYDLFQHKNNLCFD 731


>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 121 SRLPQLWVHHSSLVGILPAYRP 56
           S L  LWVH ++L G  PA  P
Sbjct: 144 SELKVLWVHRNNLTGQFPADWP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,817,494
Number of Sequences: 37544
Number of extensions: 117031
Number of successful extensions: 335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)