Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i01
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    27   2.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.7  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   6.2  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   6.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   8.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   8.2  

>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 407 VQFLVQNSM-EITDKVQ*HLRFGYLILYIEKPSIKLKDLGDGDQSTGEISVHCFRGQHFI 231
           +QFL + S+ EI      H   G   L +E PS+K    G G  +   ++        F+
Sbjct: 18  LQFLRKLSLQEIQTLKTQHQYLGRTRLDVETPSLKPSAAGSGSTAPKPVTEREIASTRFM 77

Query: 230 PKRNPI 213
           P++N I
Sbjct: 78  PRKNVI 83


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 654 PIVYSTVPRHRSSCPTHRSR 595
           P V+ T+ ++R SC T RSR
Sbjct: 854 PQVHETINQYRKSCETQRSR 873


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 230 PKRNPIVPLRYHCTDNFDAVRVANIDPAQRGYRYEMMT-KITEDIDSCPVVESVGMVTP 57
           PK++ +  + Y   D+ +  ++A  D     +   ++  KI+ D++ C V +S+   TP
Sbjct: 346 PKKDKVCNMAYIQFDSIEQAKLA-YDKGHPSWHVTLVKGKISTDMEECKVSKSILKTTP 403


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 624 YGGGQLNTQSAVK-IAHKYGCSMAIFAPAWS 713
           +G G     S V+ +A KY  SMA  A AWS
Sbjct: 272 FGAGYKAILSRVEELAKKYNVSMATLATAWS 302


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 394 CRIRWK*R-TKSSNISGLAI*FSILRSHPSNLRTLATETRALAKYRYTASEASI 236
           CR R+  + TKS + S LA  FS++ S  S +R +   T  L    Y   ++ I
Sbjct: 148 CRARFVSKDTKSFSYSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLI 201


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 420 SAPDRPVLGAEFDGNNGQSPVTSPV 346
           +AP+ P      +GN G  P T P+
Sbjct: 386 TAPNSPTSANSSEGNQGNGPTTYPI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,031
Number of Sequences: 5004
Number of extensions: 70760
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)