Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i01
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806...   240   7e-64
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984...    32   0.40 
10_08_0400 + 17625818-17625860,17626133-17626464,17626471-176267...    29   4.9  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    29   4.9  
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092...    29   4.9  
06_03_0246 + 18672704-18673111,18674069-18674164,18674362-186745...    28   6.4  
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371...    28   8.5  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   8.5  

>05_03_0612 -
           16177362-16178102,16178404-16178539,16180612-16180658,
           16181002-16181082,16181765-16181846,16181924-16182036,
           16182349-16182456,16182531-16182642,16182738-16182847,
           16183105-16183242,16183370-16183834
          Length = 710

 Score =  240 bits (588), Expect = 7e-64
 Identities = 107/237 (45%), Positives = 146/237 (61%), Gaps = 2/237 (0%)
 Frame = +3

Query: 6   CHDMANGYHDDSTVDGTGCHHAYTFYNWAAVDIFCYFSHHLITIPPLSWINVGHAHGVKV 185
           CHD   GY DD+   G     AY  ++W  +D+F YFSH+L+T+PP  W+N  H HGVKV
Sbjct: 97  CHDFRGGYRDDAAPQGGHDPGAYALWHWHLIDVFVYFSHYLVTLPPPCWVNAAHLHGVKV 156

Query: 186 IGTVITEWNDGVAFWNKMLASEAVYRYFASALVSVAKVLKFDGWLLNIENQ--IAKPEML 359
           +GT ITEW  G     +MLA+EA  + +A  L  +A  L FDGWL+NIE +  I   + L
Sbjct: 157 LGTFITEWEKGAEICEEMLATEASAQMYAERLTELAAYLGFDGWLINIEVKLDIQFIDNL 216

Query: 360 LDFVRYFHRILHQELDDPVLIWYDSVTIQGTLIWQNGLNHKNRPFFDACDGIFTNYXXXX 539
            +F+ +  + +H  +   ++IWYD++TI+G L WQN LN  N+PFFD CDG+F+NY    
Sbjct: 217 KEFINHLTKTMHAAVPGSLVIWYDAITIKGALDWQNKLNEYNKPFFDLCDGLFSNYTWKA 276

Query: 540 XXXXXXXXXXGDRLTDLYIGIDVWGRNFYGGGQLNTQSAVKIAHKYGCSMAIFAPAW 710
                     G+R  D+Y+GIDV+GRN +GGGQ NT  A+ +  K   S AIFAP W
Sbjct: 277 KYPQESAVVAGERKYDVYMGIDVYGRNTFGGGQWNTNVALDLLKKDDVSAAIFAPGW 333


>03_05_0911 +
           28697654-28697698,28698170-28698278,28698352-28698433,
           28698486-28698514,28699472-28699567,28699860-28699963,
           28700071-28700201,28700276-28700369,28701666-28701721,
           28702728-28702821
          Length = 279

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 206 LRYHCTDNFDAVRVANIDPAQRGYRYEMMTKITEDIDSCPVVESVGM 66
           L  HC      + + N+DPA   + Y + T I E I    V+E +GM
Sbjct: 22  LYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVMEELGM 68


>10_08_0400 +
           17625818-17625860,17626133-17626464,17626471-17626773,
           17626862-17627002,17627360-17627476
          Length = 311

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 105 FCYFSHHLITIPPL-SWINVGHAHGVKVIGTVITEWNDGVAFWNKMLASEAV 257
           F  F  HL TIP   + IN   + G  V+      W+D   FW   L   A+
Sbjct: 235 FAVFVVHLATIPITGTGINPARSFGAAVVYNQPNAWHDQWIFWVGPLVGSAI 286


>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
            4351133-4353092,4353465-4353840,4353932-4354326,
            4354597-4354765,4355444-4355518,4357699-4357826,
            4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 251  FRGQHFIPKRNPIVPL 204
            +RG+H+ PK+ P++PL
Sbjct: 1333 YRGRHYNPKKRPVIPL 1348


>01_03_0010 - 11608537-11608786,11608816-11608940,11609152-11609217,
            11609741-11609872,11610507-11610608,11610743-11610940,
            11611015-11611161,11611321-11611431,11613241-11613780,
            11613847-11614003,11614148-11614297,11614375-11614514,
            11615346-11615468,11615561-11615677,11617184-11617357,
            11617768-11617909,11618076-11618194,11619773-11619955
          Length = 991

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 656  GRLCIQLSPAIEVPAPHIDPDVEVCESISRLHGARGHV 543
            G   I L  A+E+   H D D+   + + +L   RGH+
Sbjct: 924  GHTTIDLGVAVEITETHKDGDLAGTDPMEKLQAVRGHL 961


>06_03_0246 +
           18672704-18673111,18674069-18674164,18674362-18674571,
           18675780-18675851,18675898-18675945
          Length = 277

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  QYRRRHGVSPCLHFLQLGSCRY 103
           ++ +R G   CLH+L+ G C+Y
Sbjct: 97  EHPQRPGEHDCLHYLRFGRCKY 118


>12_01_1022 -
           10435409-10435564,10435950-10436219,10436820-10437125,
           10437932-10438057,10439825-10439893,10440443-10440487,
           10440717-10440776,10441527-10441589,10442186-10442266,
           10442494-10442916
          Length = 532

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 20  KRVPR*QYRRRHGVSPCLHFLQLGSCRY 103
           ++VP  +Y  R G   C HF++ G C++
Sbjct: 426 QQVPSEEYPERPGQPECQHFVKSGFCKF 453


>01_01_0517 +
           3803740-3806106,3806226-3806312,3806397-3807035,
           3807118-3807282,3807363-3807657,3807739-3807953,
           3808125-3808430,3808539-3808602,3808735-3808974,
           3809150-3809253
          Length = 1493

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 289 TETRALAKYRYTASEASILFQNATPSFHSVIT 194
           TET  L KY YT++  + +F  A P+F +V+T
Sbjct: 518 TETNWLKKYLYTSTIVTFVFWGA-PTFVAVVT 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,100,997
Number of Sequences: 37544
Number of extensions: 504690
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)