Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6i01
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 90  PSCRKCRHGDTPCRLRYCHRGTRLP 16
           P C  C  GD    ++YC +GT+ P
Sbjct: 76  PICGAC--GDIAHTVKYCPKGTKNP 98


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 135  IPPLSWINVGHAHGVKVIGTVITEWNDGVAFWNKMLASEAV 257
            I P   +N+   HG+KVI T       G A + +++A   +
Sbjct: 1242 ILPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTI 1282


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 247 EASILFQNATPSFH 206
           +A I++QNA  SFH
Sbjct: 209 DALIVYQNADDSFH 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,634
Number of Sequences: 438
Number of extensions: 5044
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)