Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h22
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   2.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.3  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          27   3.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    25   9.3  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 247 NISTILVYDFHYSKDIFS*LVFINKA 324
           NI T+LVY +HY  D F   V+ + A
Sbjct: 61  NILTMLVYKYHYEMDAFPSWVYASWA 86


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 184 RVFNDWKIIRRNVLRGKLQQKNISTILVYDFHYSKDIFS*LVFINKACCFLGHG 345
           ++F DWKI    +LR  +     + +L     + KD  + LV ++++   LG+G
Sbjct: 446 KLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQKD--NLLVIVHESPRVLGNG 497


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 465 IISWNINKYPSIAIYTNVSYYYDWIFRNFKLLYCTYS 575
           I+++N++         N +Y + W+  N   + C YS
Sbjct: 47  IVTFNLSNQSVTKDLVNWAYIFSWVLSNMDAVACIYS 83


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 41  DNVKRVIITKTFPFTTEACIAGWGLINERTKVL 139
           DN  RV+ + T  F   +  + +GL N RTK L
Sbjct: 384 DNYARVVESSTAEFFDPSLASSFGLTNYRTKPL 416


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 35  FGDNVKRVIITKTFP-FTTEACIAGW 109
           F + + R + T+ +P FT + C++GW
Sbjct: 544 FCNTLSRDVYTRYYPTFTAQPCLSGW 569


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 102 LAGDLLTKEPKYWRTSSSGGHRNYYLKSRVQ*LENYTTECTAREASTKKHLDHPSI*FSL 281
           LA ++L + P         G+  Y L S V+ + NY  +    EA  KK+     +  SL
Sbjct: 385 LAREMLGRGPWNRNLVHYSGYEEYQLISVVKKMINYLQKPVQHEAFFKKYASKKFMKASL 444

Query: 282 FKR 290
           F R
Sbjct: 445 FVR 447


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 351 VLHSKCLKTNN*KKIRLLNSGDSGSALVNCNGKTHQIGIISWN 479
           VL    +  ++  +I+L  S D GS  + C  K  +   + WN
Sbjct: 70  VLAEVLVNVSSESRIQLRGSNDEGSLKIFCTSKIAKDIFLEWN 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,700
Number of Sequences: 5004
Number of extensions: 57280
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)