Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h22
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    28   5.5  
01_06_0779 - 31931893-31933317                                         28   5.5  
09_03_0115 - 12474362-12474481,12474837-12474899,12475327-12475356     27   9.7  
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061...    27   9.7  

>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 192 EHAILGSNFCVPHLSWSANTLVLSLISPQPAIQASVVNGNVF 67
           E  ++G N CV HL   + + +L+L+S   A Q+   N ++F
Sbjct: 485 ESGLMGQNNCVSHLQKISKSNLLALVSSYDA-QSDTYNFDIF 525


>01_06_0779 - 31931893-31933317
          Length = 474

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 249 VFLLKLPAQYIP--SYNFPIIEHAILGSNF-CVPHLSWSANTLVLSLISPQPAIQASV 85
           V L  L A Y+P    N  I+   I  SN+ C P  S  A  L+  L+ P P  + ++
Sbjct: 204 VILFVLLAGYLPFNETNLVILYRNITESNYRCPPWFSVEARKLLARLLDPNPKTRITI 261


>09_03_0115 - 12474362-12474481,12474837-12474899,12475327-12475356
          Length = 70

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 202 KIIRRNVLRGKLQQKNISTILVYDFHYSKDIFS*LVFINKACCFLGH 342
           KII   V    +  +N+  I +Y+ +Y +D+F+   F +K+   +GH
Sbjct: 19  KIIYAFVRNLIMDTRNLLHIAIYNINYIRDLFTEKYFNDKSVPGIGH 65


>03_05_0885 -
           28505628-28505767,28505892-28505970,28506048-28506163,
           28506588-28506654,28507361-28507456,28508729-28508838,
           28508983-28509070,28510109-28510183,28510401-28510445,
           28510521-28510595,28511392-28511763
          Length = 420

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 162 HRNYYLKSRVQ*LENYTTECTAREASTKKHLDHPSI 269
           +++Y +K RV   E   T+   RE S  K LDHP+I
Sbjct: 167 NKSYMMKVRVVRSETAMTD-VLREVSIMKMLDHPNI 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,489
Number of Sequences: 37544
Number of extensions: 320467
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)