Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6h21
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 30 0.31
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 29 0.54
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.71
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.2
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 1.2
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 1.6
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 2.2
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 2.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.9
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 27 2.9
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 3.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 3.8
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 26 5.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.0
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 6.6
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.6
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 25 8.8
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 280 NLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREV 429
++N+ QRV+PG +D NK+N ++ + + TA++ E K+R +
Sbjct: 480 HVNSSRQRVVPGATPVIDGNKKNNKKTKPAVKQVAQPTAEVSDEKKIRSL 529
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 29.1 bits (62), Expect = 0.54
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 139 EDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTT-KDVKYSAANLNAFLQRVMPG 315
E+ +TGT +T F A + S T+P + T + +YS + N+ L MP
Sbjct: 508 EETATGTTSTTFANAKRRPED----SNISPTNPKKLHTLPRSPQYSTVDSNSVLSPAMPK 563
Query: 316 MLEQLDENKENAYESSESD 372
++EN+ +ESS S+
Sbjct: 564 GYMFVNENQSMKHESSVSN 582
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.71
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -2
Query: 512 CPRDTANELPVLLQDRSSTDSA------*SPLPCTSRTFSSCTNL 396
C DT+ P++ + SST SA SPLP TS + ++ T++
Sbjct: 77 CTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 500 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 396
++ +P+ SSTD+ SPLP TS + ++ T++
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 235
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 500 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 396
++ +P+ SSTD+ SPLP TS + ++ T++
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 291
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 500 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 396
++ +P+ SSTD+ +PLP TS + ++ T++
Sbjct: 144 SSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSI 178
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 250 TTKDVKYSAANLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKL 402
+ D KYS A + + L + +L ++ENK+N E S+S + L ++L
Sbjct: 840 SVSDAKYSKAIMQSGLSK----LLSSINENKDNLKEFSKSKQKISYLESQL 886
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 301 RVMPGMLEQLDENKENAYESSESDED-NEILTAKLVQELKV-REVQGSGDQ 447
+++ ML +L + + YES S+ED +E +T KL ++K+ EVQ +Q
Sbjct: 246 QLVVAMLNRLTDYVQREYESDSSNEDESETVTEKL-GDIKINEEVQQKDEQ 295
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 319 LEQLDENKENAYESSESDEDNE 384
L LDE + AYES++++EDN+
Sbjct: 170 LRLLDEQIKRAYESAQNNEDNK 191
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 457 VLDLSWS-NTGNSLAVSLGQKQHENWCTDNGLIRFYTVKVS 576
+L LS S G +LA + ++ E C DNG + FYT S
Sbjct: 275 ILTLSKSLGAGTALAAVITSEEIEKVCYDNGFV-FYTTHAS 314
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 319 LEQLDENK-ENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSL 495
LE +DE E + + DEDN+ K+V K D+A V +
Sbjct: 1365 LEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVE 1424
Query: 496 AVSLGQKQHENWCTDNGLIRF 558
V++ +++ E + +D + F
Sbjct: 1425 DVNMDEEEDEGFKSDESVSDF 1445
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/125 (20%), Positives = 42/125 (33%)
Frame = +1
Query: 169 EFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMPGMLEQLDENKEN 348
EF +K + D + K K A A G DE+ +
Sbjct: 56 EFLPYLTTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSS 115
Query: 349 AYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHEN 528
+ ES S EDN+ ++ E + + S + S+ G+ + S + E+
Sbjct: 116 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 175
Query: 529 WCTDN 543
DN
Sbjct: 176 SSEDN 180
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/94 (22%), Positives = 38/94 (40%)
Frame = +1
Query: 136 TEDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMPG 315
T + G Q + FEA T G + +PT L + + NLN + +R+
Sbjct: 288 TPSGNIGNQAS-IFEAVHGTAPDIA--GKGLANPTALLLSSVMMLKHMNLNDYAKRIESA 344
Query: 316 MLEQLDENKENAYESSESDEDNEILTAKLVQELK 417
+ + L N + + +N T ++ +LK
Sbjct: 345 IFDTLANNPDARTKDLGGKSNNVQYTDAIISKLK 378
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 298 QRVMPGMLEQL-DENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVL 462
Q +PG EQL D NK++ + + T K + E+K ++V+G + +L
Sbjct: 222 QEGIPGHSEQLLDYNKQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKIL 277
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.8
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Frame = +1
Query: 136 TEDAST-GTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMP 312
+ AST T TT+ + VA ++ + + +T+K SAA ++ ++ M
Sbjct: 163 SSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMA 222
Query: 313 GMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNS 492
Q E + E I+ +K E+ Q + +V S + T S
Sbjct: 223 KATSQPITTAEKEIPELKPIEPEAIMISK---EINTTHDQAAATTTAAVASASTTATAES 279
Query: 493 LAVSLG 510
AV+ G
Sbjct: 280 HAVADG 285
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 394 AKLVQELKVREVQGSG-DQALSVLDLSWSNTGNSLAVSLGQKQHENW 531
+KL+ ++ E++ G + LSV++L+ NS + + +++ +NW
Sbjct: 605 SKLINRIRNLELEIGGLKEQLSVVELALDTDKNSKQIQVVERKIQNW 651
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +1
Query: 37 NNKVFCGAFVLKMWNLSGYDSEAVGFDSVAVKKTEDASTGTQTTEFFEAAVATQTVAYKD 216
+N+ CG +LK +G E + F S K D S T +A+V + Y D
Sbjct: 51 HNEADCGRAILKFMEETGTKREDIWFTS----KLNDLSGYKSTLSSIDASVKACGLGYID 106
Query: 217 GSSMTSPTED 246
+ SP D
Sbjct: 107 LFLLHSPYGD 116
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.0
Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +1
Query: 130 KKTEDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPT-----EDLTTKDV--KYSAANLN 288
+K E+ ++ +T +F + V++ + KD S +D D+ ++ +++LN
Sbjct: 21 QKIENVTSPIKTLDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDLTEEHQSSSLN 80
Query: 289 AFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDL 468
+ + G L K+ A +SES+ED + + ++++ ++ Q A++ D
Sbjct: 81 NLKWKDVEGP-NILKPIKKIAVPASESEEDFDDVDEEMLRAAEMEVFQSCQPLAVNTADT 139
Query: 469 SWSNTGNS 492
+ S++ +S
Sbjct: 140 TVSHSTSS 147
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 192 NSNCCLQRRFIDDLSYRGFD 251
+S+ CL RR D++YRG D
Sbjct: 152 DSDVCLSRRLNRDINYRGRD 171
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 414 KGTRSARQR*SGTVCTRPILE*YRQLVSRVSRTEAARELVHR*RFNKVLYGQSQCRRQIS 593
K T R R +G++ P QL +S + + VH RFN +LY + Q + +
Sbjct: 244 KKTAKKRVRFAGSLEELPKFSLEYQLAQPISTVDMYAQ-VHYIRFNTLLYYRYQLQEILL 302
Query: 594 AQHGYQRE 617
+ + Y +E
Sbjct: 303 SYNHYPQE 310
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 130 KKTEDASTGTQTTEFFEAAVATQTVAYKDGS 222
K EDA+T Q +EF+ + VA + K+GS
Sbjct: 733 KSWEDATTSEQVSEFYRSQVA-YSQKEKEGS 762
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +1
Query: 298 QRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQ 432
+RV+P + ++ ++ ++++E E+++AK+ QEL R +
Sbjct: 115 ERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATE 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,406
Number of Sequences: 5004
Number of extensions: 45233
Number of successful extensions: 188
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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