Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h21
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087...    30   1.3  
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571           29   2.2  
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    28   5.2  
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    28   6.8  
03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447     28   6.8  
11_08_0026 + 27752519-27755441,27755538-27755923                       27   9.0  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    27   9.0  
03_05_0475 + 24688705-24689457,24697842-24697880,24698000-24698032     27   9.0  

>03_05_0407 -
           23906388-23906966,23907028-23907915,23908141-23908753,
           23908858-23909021
          Length = 747

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 352 YESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHENW 531
           Y+S + D+D+E+ TA+ V+  KV   Q         + L   +T  S A  LG++++  W
Sbjct: 520 YKSDDDDDDSEVATAEWVRSKKVIPCQWVKSSGKREIQLPAGHTIPS-AEELGKRRYCKW 578


>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
          Length = 340

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 331 DENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSN-TGNSLAVSL 507
           DE KE+  E  + DE  E       +              L +L +S +N T   ++   
Sbjct: 184 DEMKEHHNEDEDDDEYEEPFEQWEARRNVDAFAIAENMHELRLLQISGNNLTNKGVSELA 243

Query: 508 GQKQHENWCTDNGLIRFYTVKVSAG 582
            Q+ + + C DNGL+    + VS G
Sbjct: 244 AQRSNMSGCLDNGLMLTVQISVSLG 268


>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 244 DLTTKDVKYSAANLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAK--LVQELK 417
           D +T+DVK +  N    ++  +P M  QL + K+N   ++      ++ + K  L +++ 
Sbjct: 468 DQSTEDVKSAPTNDLESIKDSIPNMANQLHDQKDNLAIATVHSSSADVPSRKGPLPEQVL 527

Query: 418 VREVQGSGDQALS 456
              +   GD+ +S
Sbjct: 528 SEPISALGDRTVS 540


>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
            23321938-23322417,23322535-23322815,23323207-23323302,
            23323423-23323548,23324100-23325890
          Length = 1630

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 295  LQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQAL 453
            +QRV+P     L    ++   S+  D D ++L  +++   K + VQGS D  L
Sbjct: 923  VQRVLPSDAPSLQAGDDS---SANFDRDRQLLNLRMLDSRKNKIVQGSVDAEL 972


>03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447
          Length = 545

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 219 FIDDLSYRGFDDKRRKIFGSQFKCVPPKSNAGYA*AAR 332
           ++D     GF+D R +IFGS      P   +G+A  AR
Sbjct: 108 YVDSDPGHGFEDIREQIFGSADTSAVPAPMSGFAQNAR 145


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 451 LSVLDLSWSNTGNSLAVSLGQ 513
           LSVLDLSWSN   ++    GQ
Sbjct: 351 LSVLDLSWSNLTGAIPPEYGQ 371


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 400 LVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHENWCTDNGLIRFYTVKV 573
           L  E+KV+ +  S     SVL L + N   S A+SL  +  +N    + +I    V++
Sbjct: 332 LYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRI 389


>03_05_0475 + 24688705-24689457,24697842-24697880,24698000-24698032
          Length = 274

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 445 QALSVLDLSWSNTGNSLAVSLG 510
           ++LS+LDLSW++    L  +LG
Sbjct: 2   ESLSILDLSWNSLAGGLPAALG 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,896
Number of Sequences: 37544
Number of extensions: 287817
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)