Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h19
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   3.4  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    26   4.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   4.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.0  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    25   7.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.9  

>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 577 STSGKNTHE-GKSSSLASITSFSEDSAATFAMLRLYSFS 464
           S SG + H  G SS  +S TS    SA+TF + R Y F+
Sbjct: 465 SASGSSAHSSGSSSGSSSATS----SASTFNLSRFYVFA 499


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 456 WRKEN--EYKRNIAKVAALSSEKDVILARLDDLP 551
           +RKE+   Y++ IAKVA L      ++ARL+  P
Sbjct: 177 FRKEDIDRYEQTIAKVAYLKKNLPRVVARLEKTP 210


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 541 SSLASITSFSEDSAATFAMLRLYSFSLRH 455
           S  A+I   S DSA  F   RLY   L+H
Sbjct: 723 SKTAAILGVSRDSAKVFNYGRLYGAGLKH 751


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 546 SRQVSLVSHLFQKTVQRPLRCCVCIRS 466
           +R  +L SH+   T  RP +C +C +S
Sbjct: 582 TRAYNLKSHMNTHTNYRPFQCSICKKS 608


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 165 VSLILKQFSYLFRIRFNHENTCNAAVV*CSMASDNNMAGASKTALPPGSDD--GNSVFSM 338
           V+ +LK +  ++RI+F H+ + + A    S     N    S   +  G D+  G  V+S+
Sbjct: 79  VADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSI 138


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 456 WRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPD 572
           ++   EY++ +  +  L S+ D+I   ++DL S +   D
Sbjct: 257 FKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITD 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,194
Number of Sequences: 5004
Number of extensions: 47458
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)