Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h19
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356     29   2.7  
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    29   3.5  
06_01_0033 - 346273-347355                                             29   3.5  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   4.6  
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381     28   6.1  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    27   8.1  

>07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356
          Length = 218

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +2

Query: 335 YDVHISQKGVDCRSCVLSRLYAMERCVAYWARYIVGDARSMAQGERI 475
           YDV I+ +GVD +  V +RL+  +R VA   R  + D +SM  G+R+
Sbjct: 59  YDVFINHRGVDTKRTV-ARLF-YDRLVAAGVRAFL-DNQSMRPGDRL 102


>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 456 WRKENEYKRNIAKVAALSSEKDVILARLDDLPSWV 560
           W K N+Y   + K       K V+LAR   LPS++
Sbjct: 261 WLKSNKYFHIVVKGVERDGWKFVLLARFSPLPSYI 295


>06_01_0033 - 346273-347355
          Length = 360

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 363 SIVGAVY----LVGYMQWSVAWLIGPVILSVMRDQWR 461
           ++VG+ Y    L GY  W++ + +  +  S++RDQ R
Sbjct: 257 AVVGSAYEVIKLKGYTSWAIGYSVASIAWSLLRDQRR 293


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 432 ILSVMRDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 557
           ILS+  D W +      N AK+ + S + DV+     D PSW
Sbjct: 809 ILSLEFDPWDESYSTANNFAKMLSASEKNDVLF----DAPSW 846


>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
          Length = 383

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 323 VAIITAWW*GSFACTCHVIITGHAA 249
           +A++  WW  S A +C   I+ H A
Sbjct: 17  LALVAQWWSSSMAASCSFTISNHCA 41


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 432 ILSVMRDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFP 569
           IL+    +WRK  ++K N+ KVA+   +  + + R+    SW+  P
Sbjct: 441 ILTNFEQRWRKATKWKVNLKKVASWHHDTLIKINRM----SWIVTP 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,771
Number of Sequences: 37544
Number of extensions: 288468
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)