Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6h10
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.99
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.99
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.99
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.99
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.99
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.99
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.99
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.99
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.99
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.99
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.99
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 5.3
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 7.0
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 355 HRYV*LLSLLELPDFSHLTQEN 290
HRY LS LELP FS T EN
Sbjct: 1135 HRYSPALSPLELPSFSDKTDEN 1156
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 277 IFYPYLLIGVSCAQLISGFTLFLSYKKDHSTGKLISFSLYVVF--LNVA 137
+FY + ++ C+ FL K DHS LIS SL VF +NVA
Sbjct: 774 VFYSFSILETVCS---CNLDRFLDSKLDHSGWSLISKSLSEVFKIINVA 819
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 223 SRKSTGHTIHQLTST 267
SR+STGHTI +L ST
Sbjct: 610 SRESTGHTIKELRST 624
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 473 QR*MVLLFHLLFLEKEQLLEHCCPSITVEFVK 378
Q +LL +L L KEQ+LE+C +++ ++
Sbjct: 479 QHIQLLLDSVLDLSKEQILEYCLETVSSHLIE 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,636
Number of Sequences: 5004
Number of extensions: 41984
Number of successful extensions: 106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -