Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6h09
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 1.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 28 1.4
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 27 3.1
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 4.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 5.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.2
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 25 9.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.5
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 9.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 9.5
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 448 HWSPSFAGGLQFAGASVHQRFLHARLR-GIP 537
+W P L+F G+S + +H RLR G+P
Sbjct: 604 YWDPFMITDLKFIGSSENAELIHQRLRNGLP 634
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 491 RRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAI 610
RR Y +Y++F + + +GLGP Y NPN I
Sbjct: 40 RRLFYHGYN-NYMQFAFPNDELAPLSCEGLGPDYENPNNI 78
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 458 LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIIDTTLP 628
+V DF + + + + T+ E + +++ V G +G Y +PN I+ TLP
Sbjct: 278 IVRQLDFRVKSQNHLSYNTTMKIFELIPSIKLVLS-GHDHMGCDYEHPNGAIEHTLP 333
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 583 SKALDALLLHSFNSFKEFHVVERVRIFDEPTHQQI 479
SK ++ LL FNS K +H + V+ +D+P H+ I
Sbjct: 139 SKPVNFLLYQPFNSGKYYHNWQFVQNYDDP-HETI 172
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 179 RLRPTRKAAARILLHVFQTSAKRTIVSCILNSD 81
R + ++ R+LL + K TI+ C+LN D
Sbjct: 8 RQQKLKEREVRVLLLGLDNAGKTTILKCLLNED 40
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 419 FAHFARILNFIGVLVSPEDFNLLVRRFIKDSYTLD----YVEFLKAVEA 553
+A++ + + F G + + +V+R+IK SY D ++EFL V A
Sbjct: 12 YAYYNQTVTFFGKALDVLPGSPIVKRYIKSSYQNDPLRTFIEFLLLVFA 60
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 621 VVSIMALGLL*AGPRPWMPSFCTASTALRNST*SSV*ESLMNRRTSKLKSSGETRTPMKF 442
+V+ ++ G L P + SFCT S+ L N S+ + T S R+P F
Sbjct: 609 IVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFPLSLLTQASMKATKNAVFSLYKRSPKSF 668
Query: 441 RI 436
RI
Sbjct: 669 RI 670
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 146 ILLHVFQTSAKRTIVSCILNSDALCTPPNCFTSF 45
+L V +AK ++ C+ NS PNC + F
Sbjct: 414 VLPEVNPLTAKMEVIDCLRNSFWAALRPNCVSYF 447
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 507 SLMNRRTSKLKSSGETRTPMKFRIRAK*ANVIRPS 403
SL R S+++S+ +RT +R K AN++RPS
Sbjct: 360 SLGVRSPSRIQSTLSSRTTTG-NVRTKAANIVRPS 393
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +2
Query: 305 WLITSELKTEGYYTISCARSCTVKVGYYKVAKNDGRITFAHFARILNFIGVLVSPEDF-N 481
WLI + E R+ K YY+ G +F I N IG V + N
Sbjct: 479 WLIVLFILPERLCCFMSRRTGLTKHPYYRYISGFGAALNIYFMIICNLIGFAVGIDGIKN 538
Query: 482 LLVRRFI 502
+LV F+
Sbjct: 539 VLVSFFL 545
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 646 SGTWQLGQCRIYYGIGVVVSRSKALDALLLHSFNSF 539
S ++LG+ ++++ V+ S +ALL FNSF
Sbjct: 742 STVYRLGETKVFFKASVLGSLEDRRNALLRVIFNSF 777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,016
Number of Sequences: 5004
Number of extensions: 54753
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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