Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6h09
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0347 + 16887182-16888504 29 3.2
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.2
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 29 4.3
02_01_0700 + 5229681-5229719,5230235-5230334,5230406-5230463,523... 29 4.3
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844 28 7.5
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 28 7.5
12_02_0988 - 25064023-25064327,25064425-25064575,25064995-250652... 27 9.9
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372 27 9.9
>09_04_0347 + 16887182-16888504
Length = 440
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 293 SASDKPIT--DRSGPASIETNFDSEISEFPSGS 201
+ASD P + SGP SIE N DSE S P S
Sbjct: 80 AASDSPRAAGNPSGPRSIEVNSDSEDSALPLAS 112
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 293 SASDKPITDRSGPASIETNFDSEISEFPSGSRGRYQSQRLRPTRKAA--ARILLHVFQTS 120
+ +P RSG ++ S S RG+ +S RP +AA A +++ F +
Sbjct: 1210 AVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFA 1269
Query: 119 AKRTIVSCILNSDALCTPPN 60
IV+C+ S PP+
Sbjct: 1270 LLLAIVACVCCSKKKKRPPH 1289
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 401 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 562
N G IT+ L +G L+ PE L+ I +S T+DY EFL A + K
Sbjct: 366 NSGTITYDELKNGLKRVGSDLMEPEIQALMDAADIDNSGTIDYGEFLAATLHMNK 420
>02_01_0700 +
5229681-5229719,5230235-5230334,5230406-5230463,
5230542-5230898,5230991-5231088,5232054-5232144,
5232183-5232243
Length = 267
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 400 FCYFIVPHLHRARPGTADGII 338
FC ++ P LH ++PG + GI+
Sbjct: 179 FCEYLAPLLHLSKPGNSTGIV 199
>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
Length = 774
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 497 FIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIIDTTLPK 631
F+K+ + V+ K ++ V K Q L P+ NPN + +T P+
Sbjct: 102 FLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPR 146
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 401 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 562
N G+ITF L +G L E + L+ + +S T+DY EF+ A + K
Sbjct: 450 NSGQITFEELKVGLKKVGANLQESEIYALMQAADVDNSGTIDYGEFIAATLHMNK 504
>12_02_0988 -
25064023-25064327,25064425-25064575,25064995-25065259,
25065640-25065836
Length = 305
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = -2
Query: 649 ISGTWQLGQCRIYYGIGVVVSRSKALDALLLHSFNSFKEFHVVERVRIFDEPTHQQIEVL 470
++G W +G ++ IG+ VSR A L L+ F ++ I D E+L
Sbjct: 199 LTGVW-VGDKKVA-AIGIHVSRWIAYHGLALNVTTDLTPFQLIVPCGIKDRGVGSIKEIL 256
Query: 469 RRN*DSNEI*DSSEMSECYTTVI 401
+ D EI +++ + + Y T++
Sbjct: 257 QIASDGKEIDETALIDKAYRTLL 279
>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
Length = 290
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +2
Query: 437 ILNFIGVLVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIID 616
++ F+ VL P + + I + Y DY + A +E ++ PNA++
Sbjct: 131 LIGFVSVLYDPL-LDYPINYDIAEQYAYDYERYEAEARAWTREFSSAPVVSHYPPNAVVG 189
Query: 617 TTLPKLP 637
T P +P
Sbjct: 190 RTPPAVP 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,785
Number of Sequences: 37544
Number of extensions: 382359
Number of successful extensions: 1068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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