Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6h04
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    29   0.43 
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    29   0.75 
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    29   0.75 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    28   1.00 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    28   1.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   3.0  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   4.0  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   5.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   5.3  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   7.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.3  

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
 Frame = +2

Query: 317 QVLRYFKMIYIFGTVCLMIATGMLVLGTLVDTYNLVNFYVWYAFLYLSVY-----FVMAM 481
           QV +Y   +     VC M++TG                + ++  L  S       F++ +
Sbjct: 211 QVQKYISGVVALSIVCTMVSTGYFYFANSKGYTTGSKVFAFFLSLAQSARQSYFGFLLLI 270

Query: 482 FSVGVNVI--TTGTISKRQSVCTLFTVVWSCFFLYFLMV 592
            S+G +++  + G++ ++  +      V SCFFL  L +
Sbjct: 271 VSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSSLFI 309


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 469 KINGQIQKGIPHVEVHQIVGI 407
           K+NG +QKG+PH   H   G+
Sbjct: 43  KVNGAVQKGMPHKYYHGKTGV 63


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 469 KINGQIQKGIPHVEVHQIVGI 407
           K+NG +QKG+PH   H   G+
Sbjct: 43  KVNGAVQKGMPHKYYHGKTGV 63


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 9/54 (16%), Positives = 28/54 (51%)
 Frame = +2

Query: 419 LVNFYVWYAFLYLSVYFVMAMFSVGVNVITTGTISKRQSVCTLFTVVWSCFFLY 580
           ++N Y+W   +    + +  +  + V ++ TG++   + + + F ++ SC  ++
Sbjct: 184 VINLYIWIKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISYFNLLTSCLIIF 237


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 31  QLKPSTKMMYNVFETH*IS*SYRTVFVFSACLLR*YCNKTEKAHTARLFGLFAKM 195
           +LK S   + N+F T   +  + ++ VFS CLL          H A L  +FA++
Sbjct: 591 KLKQSAPKLQNIFTTLYTAWCHNSIAVFSLCLL-----SQNYEHAANLLSVFAEI 640


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 230 LISFLSF--FWAAFELVTIDRFTTKMFLN-HEQVLRYFKMIYIFGTVCLMIATGMLVLGT 400
           L++F S   F+ AF  V     T+   LN +    R   +++ +  +CL+ +  ML +G 
Sbjct: 606 LVNFFSMANFFLAFYFVC--NATSYSSLNPYGNWARPLFLVFEYILICLIFSQFMLAMGN 663

Query: 401 LVDTYNLVNFYVWYAFLYLSVYFVMAMFSVGV 496
              +  ++ F     F  + +YFV  +F + +
Sbjct: 664 RPRSCRVLLFISTALFSIIMIYFVFCVFYISL 695


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 549 KSVHTDCLFEIVPVVITFTPTLNIAITK*T 460
           +++HTD LF +V  +  F P L + I+  T
Sbjct: 544 RTLHTDILFGLVKDIARFRPDLKVLISSAT 573


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 FLNHEQVLRYFKMIYIFGTVCLMIATGMLVLGTLVD 409
           F+N   V  Y +M +I  T+ ++   G ++LG ++D
Sbjct: 208 FINIFGVKGYGEMEFIMSTIKVVAMCGFIILGIIID 243


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 288 NLSIVTSSNAAQKKERKEISNTAALRGIQPQH 193
           N SIV S N   +++R EI     L GI+  H
Sbjct: 3   NSSIVKSPNPTIEEQRNEIEKLKNLTGIEEVH 34


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 328 ILQDDLHFWDSLLDDRHW 381
           I+ D+LH+W+S+  D++W
Sbjct: 92  IMSDNLHYWESI--DKNW 107


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 506 LSRSHRH*TLPSQNKRTDTERHTTRRS-SPN 417
           LSR HRH T    +KR D  R+  RR  SPN
Sbjct: 162 LSRHHRHSTTNYHSKRDD--RYERRREHSPN 190


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 530  VSSK*CQSLSRSHRH*TLPSQNKRTDTERHTT 435
            VSS    S S+S  H  LP   + T ++ HTT
Sbjct: 1158 VSSTMSASQSQSSMHTALPDVTEGTSSDEHTT 1189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,418
Number of Sequences: 5004
Number of extensions: 55940
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)