Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6h04
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0531 - 4192567-4193253,4193900-4194427 36 0.027
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 31 1.0
08_02_0707 - 20212190-20214592 29 2.4
02_02_0545 - 11376016-11378307 29 4.1
10_08_0310 - 16669565-16669822,16670558-16670794 28 5.5
04_01_0049 - 532308-532961 28 5.5
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 28 5.5
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 27 9.6
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 27 9.6
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824 27 9.6
>11_01_0531 - 4192567-4193253,4193900-4194427
Length = 404
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +2
Query: 326 RYFKMIYIFGTVCLMIATGMLVLGTLVDTYNLV----NFYVWYAFLYLSVYFVMAMFSVG 493
+YF ++ F ++A +LV G +L +F V +++S+ ++ F
Sbjct: 241 KYFMVLDTFAITTSVVAVILLVYGKTAAAAHLAVSWKSFVVTLQCIWVSLVSLILAFFSA 300
Query: 494 VNVITTGTISKRQSVCTLFTVVWSCFFLYFLMV 592
++ + T S R + T+F V++ CF L +
Sbjct: 301 IHAVVIATSSSRTVLITMFLVIYVCFNALILWI 333
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 30.7 bits (66), Expect = 1.0
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Frame = -1
Query: 538 HGLSLRNSASRYHVHTDTEHCHHKINGQIQ---KGI-PHVEVHQIVGIHERAQNKHSSGD 371
H S +S+S+YH +T H K+N Q++ K + P H +H A +
Sbjct: 263 HLSSRPSSSSQYHSKPNTPVGHPKVNPQLEWKPKSVSPSPANHADNVVHSSAASSVDGNQ 322
Query: 370 -HQADCPKNVDHLEVSQD-LLVIQEHFRSEPINR-----DQFECCPEER 245
H A K + VS+D ++I H R R FEC E +
Sbjct: 323 AHMAGLSKKLSQTNVSEDEHVIIPAHLRVPDSERTHLIFGNFECDVESK 371
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = -1
Query: 556 HGEECAHGLSLRNSASRYHVHTDTEHCH-HKINGQIQKGIPHVEVHQIVGIHERAQNKHS 380
HG C+H S +S S H H+ + H H H+ + + V + H NK
Sbjct: 492 HGGSCSHSHSHSHSHSHSHSHSHS-HVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSH 550
Query: 379 SGDHQADCPKNVDH 338
DH D H
Sbjct: 551 HHDHHHDSSNEESH 564
>02_02_0545 - 11376016-11378307
Length = 763
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 554 VVWSCFFLYFLMVVNSF-RYTIW*LNSDITI 643
VVWSCFFL+ L +S YT+ + S T+
Sbjct: 98 VVWSCFFLFVLASSDSITAYTLADIKSPATV 128
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 484 EHCHHKINGQIQKGIPHVEVHQIVG 410
EH K+NG + KG+PH H G
Sbjct: 38 EHVDVKVNGAVHKGMPHKFYHGRTG 62
>04_01_0049 - 532308-532961
Length = 217
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 341 IYIFGTVCLMIATGMLVLGTLVDTYNLVNFYVW 439
+Y FG + L I TG VL T+ L+ +VW
Sbjct: 67 VYAFGVLLLEIVTGRRVLCKFQGTFQLLVDWVW 99
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 434 VWYAFL--YLSVYFVMAMFSVGVNVITTGTISKRQSVCTLFTVV-WSCFFLYFLMVVNSF 604
++++FL Y F A+F + +I G++ F V+ W+ FFL F NS
Sbjct: 211 IYFSFLGMYTRWLFFPAVFGLATQLIDFGSLQWLVLPAFFFFVISWAVFFLQFWKRKNSA 270
Query: 605 RYTIW*LN 628
W +N
Sbjct: 271 VLARWGIN 278
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 164 PLDCLGYSRKCCGCIPLKAAVLLISFLSFFWAAF 265
PL CLG + PL+ LL+ +L+FF A F
Sbjct: 78 PLWCLGVVIRYGILFPLRGLTLLVGWLAFFAAFF 111
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/81 (25%), Positives = 27/81 (33%)
Frame = -1
Query: 616 YCVSKTVDNHQKIKKKATPYHGEECAHGLSLRNSASRYHVHTDTEHCHHKINGQIQKGIP 437
+CV K D +KA Y A + S + Y T HC + N QK P
Sbjct: 21 FCVCKP-DQSPAAMQKAIDYACWRGADCTQIMQSGACYQPSTIVAHCSYATNSYFQKNSP 79
Query: 436 HVEVHQIVGIHERAQNKHSSG 374
G+ SSG
Sbjct: 80 IGATCDFGGVATLTNTDPSSG 100
>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
Length = 613
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 323 LRYFKMIYIFGTVCLMIATGMLVLGTL--VDTYNLVNFYVWYAFLYLSVYFVMAMFSVGV 496
LR I +C ++ ++ LG+ +V F +W AF +V + +A +++G
Sbjct: 16 LRQLARIEALVLLCSVVLALLVFLGSSRRYSGSAMVRFILWGAF---AVSYPLAAYTIG- 71
Query: 497 NVITTGTISKRQSVCTLFTVVWSCFFLYFL 586
+ T + LF +VWSCFFL+ L
Sbjct: 72 --LMQSTPMHHE----LF-LVWSCFFLFVL 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,683
Number of Sequences: 37544
Number of extensions: 345513
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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