Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g24
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    26   7.5  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    26   7.5  

>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 146 LPKVK*KGEIEKITKDCKLNSVMFF 220
           LP+V+  G +EK+  +CKL    +F
Sbjct: 152 LPEVRAAGLLEKLDDECKLRQEAYF 176


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 146 LPKVK*KGEIEKITKDCKLNSVMFF 220
           LP+V+  G +EK+  +CKL    +F
Sbjct: 640 LPEVRAAGLLEKLDDECKLRQEAYF 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,608,584
Number of Sequences: 27780
Number of extensions: 79205
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)