Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g23
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.6  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = +3

Query: 213 VCIMLAHTVMAFHMIYLLNPHFLEKNSH----HPASAYLQNGTCAVHTFVLASSFLLTYS 380
           VC++L    M     Y+ +P FL   +H    +P S + QN        +  SS     S
Sbjct: 332 VCMLLLSMAMGSLFSYIRHPEFLSDENHDRWTYPGSQFYQNAKLLFPKVISESSLETVQS 391

Query: 381 LLIS 392
             ++
Sbjct: 392 FFLA 395


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 405 DFCLQKLAGCTSEESWTPGRRC 340
           DFC QK   C  ++S  PG  C
Sbjct: 77  DFCRQKKIRCDMDQSPRPGNAC 98


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 245 LPHDLPSQPTLLRKEQPPPGVSVPAERNVRS 337
           +P+D  S PT++    PPP   +P + ++ +
Sbjct: 891 IPNDATSLPTIITHPTPPPPPPLPVKTSLNT 921


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 281 RKEQPPPGVSVPAERNVRSPHL 346
           R   PPPG S  A + V+SP +
Sbjct: 418 RSVPPPPGFSTNAPKAVKSPEI 439


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 433 SKRTLSFSFGFLSSEISRLY-VRRKLDARTKVWTAHVPFC 317
           S+ T   +    S  I  +Y V  K+  +TK W    PFC
Sbjct: 289 SRATFEVNIPAWSRTIETIYPVVLKMCTKTKYWNVFFPFC 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,491
Number of Sequences: 5004
Number of extensions: 39566
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)