Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6g23
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0403 - 23855059-23855075,23855134-23855162,23855318-238553... 31 0.54
07_03_1156 - 24416835-24417461 30 1.7
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 30 1.7
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 29 2.9
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 28 5.1
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 6.7
09_06_0319 - 22293869-22293906,22294539-22295808 27 8.9
06_03_0006 - 15306302-15306805,15307758-15307893,15308909-153090... 27 8.9
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 27 8.9
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 27 8.9
>03_05_0403 -
23855059-23855075,23855134-23855162,23855318-23855375,
23855667-23856123
Length = 186
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 227 GAHRDGLPHDLPSQPTLLRKEQPPPGV--SVP--AERNVRSPHLRPGVQLSSDVQPANF* 394
G H G P +PS P R PPPG+ +P A ++R P + ++ + A
Sbjct: 15 GLHLSG-PRCIPSLPPAFRTISPPPGLIDYLPPAASPHIRLPRQQQRLRWRRTLSMATTT 73
Query: 395 RQKSKRKAQRSFTAENFGAS 454
R++S+ A + A+ G S
Sbjct: 74 RRRSRTSAASAAVADERGVS 93
>07_03_1156 - 24416835-24417461
Length = 208
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 233 HRDGLPHDLPSQPTLLRKEQPPPGVSVP-AERNVRSPH 343
H + PH P+ P L + E PPP +VP ++ PH
Sbjct: 57 HEEPPPHPHPAVPELPKPELPPPHPAVPELPKHEEPPH 94
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 173 SAEATSWCKNLDTGVHHAGAHRDGLPHDLPSQPTLLRKEQ-PP-PGVSVPAERNVRSPHL 346
+ E T+ CK + A G+ LP L++ + PP PG+S+P + +V S L
Sbjct: 972 AGEETAKCKAAKEVIKSLTAQLKGMAEKLPEGAGLVKNSRLPPLPGISIPTDISVASESL 1031
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 245 LPHDLPSQPTLLRKEQP--PPGVSVPAERNVRSPHLRPGVQLSSDVQP 382
+P LP+ P L + P P G +VP ER +RS + P Q S V P
Sbjct: 150 VPSPLPAIPATLDENIPRIPDGQNVPRERELRSTPMPPH-QNQSTVAP 196
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 6 IRVARPCAKAVNKHKQNYPSDYF*YVQANRYLITWSLISNWNRLTADYAD 155
+R+ R A+AV DYF +A L + LI+ W+RL AD
Sbjct: 848 VRLVRGAAEAVTDAYMRSAVDYFEATRARPSLASTLLITAWSRLPFRAAD 897
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 230 AHRDGLPHDLPSQPTLLRKEQPPPGVSVPAERNVRS-PHLRP 352
AHR LP P+ E PG+ P R+ R PH+ P
Sbjct: 38 AHRHSLPAPAPAPAPAPAPETHRPGIRHPVPRHHRKRPHVAP 79
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 472 VRNRMYRCTKIFGSKRTLSFSFGFLSSEIS 383
++N+ + FG++RTL + ++SS IS
Sbjct: 387 MKNKRLKVVAEFGAERTLGIGYAYMSSNIS 416
>06_03_0006 -
15306302-15306805,15307758-15307893,15308909-15309087,
15310097-15310230,15310712-15311210,15311372-15311720,
15314597-15314649
Length = 617
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 313 YADAGWWLFFSKKCG 269
Y D GW + F KKCG
Sbjct: 102 YEDRGWKMIFEKKCG 116
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 279 LEKNSHHPASAYLQNGTCAVHTFVLASSFLLTYSLLISEDKN 404
++K + HP +Y N +CA A + ++ L+SE K+
Sbjct: 1624 VQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKD 1665
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 279 LEKNSHHPASAYLQNGTCAVHTFVLASSFLLTYSLLISEDKN 404
++K + HP +Y N +CA A + ++ L+SE K+
Sbjct: 1624 VQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKD 1665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,488,017
Number of Sequences: 37544
Number of extensions: 291820
Number of successful extensions: 1058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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