Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g23
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    35   0.040
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    33   0.12 
Z99282-2|CAB16533.1|  613|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z83129-12|CAB05645.1|  613|Caenorhabditis elegans Hypothetical p...    32   0.37 
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    32   0.37 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    27   8.0  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 31/124 (25%), Positives = 59/124 (47%)
 Frame = +3

Query: 93  RYLITWSLISNWNRLTADYADGDQKLAALKPLHGVKTLTLVCIMLAHTVMAFHMIYLLNP 272
           + LI++SL   W       +  +QK+  +K L  ++ L+++ ++  HTV       +L P
Sbjct: 245 KILISFSL---WTNAELILSVKEQKVGFIKCLDCIRFLSMLWVVSGHTVSNIMFPDVLLP 301

Query: 273 HFLEKNSHHPASAYLQNGTCAVHTFVLASSFLLTYSLLISEDKNPKEKLNVRLLPKILVH 452
             +   + H  +  L N   +V TF L S  +++Y    +  K+ + K  +  +    VH
Sbjct: 302 --VTTFTKHFWNHLLLNAFVSVDTFFLLSGIVVSYLFFKNRMKSSQIKSPLTWI-LFYVH 358

Query: 453 RYIR 464
           RY+R
Sbjct: 359 RYLR 362


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 263 SQPTLLRKEQPPPGVSVPAERNVRSP----HLRPGVQLSSDVQP 382
           S P+L+   +PPPG+S+P       P       PGV +SSD+ P
Sbjct: 251 SAPSLMDFTRPPPGMSMPPPMGTAPPTSVADAPPGVDMSSDLPP 294


>Z99282-2|CAB16533.1|  613|Caenorhabditis elegans Hypothetical
           protein W06G6.1 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 31/137 (22%), Positives = 54/137 (39%)
 Frame = +3

Query: 54  NYPSDYF*YVQANRYLITWSLISNWNRLTADYADGDQKLAALKPLHGVKTLTLVCIMLAH 233
           N PSD     + N YL      S W       +  +QK   +K L  ++  ++  ++  H
Sbjct: 151 NIPSDK----ETNLYLKFLLAFSFWTNAGQILSVKEQKPGFIKSLDCIRAFSISWVIAGH 206

Query: 234 TVMAFHMIYLLNPHFLEKNSHHPASAYLQNGTCAVHTFVLASSFLLTYSLLISEDKNPKE 413
           +++ F     L P  +        +    N T +V TF L S  ++ Y       K+   
Sbjct: 207 SLLFFEFNETLIP--ISNVPKLIWNHLFLNATVSVDTFFLMSGIVVAYLFFKQRPKSSTI 264

Query: 414 KLNVRLLPKILVHRYIR 464
           K  +  +    +HRY+R
Sbjct: 265 KSPLTWI-LFYLHRYLR 280


>Z83129-12|CAB05645.1|  613|Caenorhabditis elegans Hypothetical
           protein W06G6.1 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 31/137 (22%), Positives = 54/137 (39%)
 Frame = +3

Query: 54  NYPSDYF*YVQANRYLITWSLISNWNRLTADYADGDQKLAALKPLHGVKTLTLVCIMLAH 233
           N PSD     + N YL      S W       +  +QK   +K L  ++  ++  ++  H
Sbjct: 151 NIPSDK----ETNLYLKFLLAFSFWTNAGQILSVKEQKPGFIKSLDCIRAFSISWVIAGH 206

Query: 234 TVMAFHMIYLLNPHFLEKNSHHPASAYLQNGTCAVHTFVLASSFLLTYSLLISEDKNPKE 413
           +++ F     L P  +        +    N T +V TF L S  ++ Y       K+   
Sbjct: 207 SLLFFEFNETLIP--ISNVPKLIWNHLFLNATVSVDTFFLMSGIVVAYLFFKQRPKSSTI 264

Query: 414 KLNVRLLPKILVHRYIR 464
           K  +  +    +HRY+R
Sbjct: 265 KSPLTWI-LFYLHRYLR 280


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 26/93 (27%), Positives = 41/93 (44%)
 Frame = +3

Query: 186 LHGVKTLTLVCIMLAHTVMAFHMIYLLNPHFLEKNSHHPASAYLQNGTCAVHTFVLASSF 365
           L+ ++T++ V ++L H   A  ++   NP  L   +     A L N   AV TF   S+F
Sbjct: 277 LNCIRTISTVWVILGHCA-AMLILICTNPVDLLDFTKTYMGALLVNAYFAVDTFFFISAF 335

Query: 366 LLTYSLLISEDKNPKEKLNVRLLPKILVHRYIR 464
           LL++       K  K  ++        VHR  R
Sbjct: 336 LLSFLWFKQLQKQRKALISPGGWMMFYVHRIAR 368


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 248 PHDLPSQPTLLRKEQPPPGVSVPAERNVRSPHLRP 352
           PH  P+  T L   QPPP    P   N R P+  P
Sbjct: 185 PHSSPNNRTSLYNPQPPPKTGYPT--NPRVPYNPP 217


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = +2

Query: 176 AEATSWCKNLDTGVHHAGAHRDGLPHDLPSQPTLLRKEQPPPGVSVPAERNVRSPHLRPG 355
           A A    K L   +   G   DGL  DL  +P+ L   +PP  + +  ER    P  +  
Sbjct: 95  AHAAVLHKKLVQNIQQTGLELDGLFKDLEPEPSGLNTRRPPK-LELNLERVDEIPFCQSS 153

Query: 356 VQLSSDVQPANF*RQKSK 409
           +Q   D     F    S+
Sbjct: 154 MQGEIDENEIRFDNNSSQ 171


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = +2

Query: 221 HAGAHRDGLPHDLPSQPTLLRKEQPPPGVSVPAERNVRSPH-----LRPGVQLSSDVQPA 385
           H GA     P   P  P  +   +P P    PA++   S       +RP ++ ++DV+P 
Sbjct: 147 HHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSSDREQFRTMRP-LRPANDVKPT 205

Query: 386 NF*RQKSKRKAQRSFTAENFGASVHPVP 469
            + R  S     ++ +A      + P P
Sbjct: 206 MYRRSGSSEDIPQATSATRLARPLAPPP 233


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 248  PHDLPSQPTLLRKEQPPPGVSVPAERNVRSPHLRPGVQLSSDVQPA 385
            P   P++P++    QPPP  S  + + +++P  +P  Q+  + Q A
Sbjct: 1221 PQHFPTEPSI---RQPPPQQSYNSNQMLQNPRQQPQNQIVQNFQSA 1263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,932
Number of Sequences: 27780
Number of extensions: 243147
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)