Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g19
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    30   0.89 
11_01_0758 + 6362500-6363233,6363709-6365500                           28   4.7  
10_08_0609 - 19196705-19196845,19196927-19196984,19197072-191971...    27   8.3  
07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062     27   8.3  
01_05_0225 - 19501643-19501903,19503974-19504477                       27   8.3  

>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -1

Query: 407 VIYCEKVTSRRLLCLLACFS------C-RSAVAESLSPXITNCWFEVFGVIPRGSMITR 252
           +IYC+K+ S ++ C L   S      C R  V ES +P ++N +F  + V+    + T+
Sbjct: 241 LIYCDKIASLKIPCTLQQLSYLKVSECSRMRVIESKAPKVSNFYFTGYKVVNTPMLTTK 299


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 308 TNCWFEVFGVIPRGSMITRVSSTFKFHEKATAFRNIY*RNVFKL 177
           T+ W  V    P+G+  +R+ +T KF E A      + + VFK+
Sbjct: 256 TSVWDVVSRAFPKGNCGSRIVTTTKFEEVALTSCGYHSKYVFKI 299


>10_08_0609 -
           19196705-19196845,19196927-19196984,19197072-19197142,
           19197352-19197428,19197500-19197582,19197659-19197718,
           19198007-19198142,19198247-19198317,19198560-19198651,
           19198785-19198882,19199012-19199164,19199254-19199419,
           19200112-19200510,19200592-19200673,19200739-19200962
          Length = 636

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 268 GP*LQEFQALSNSTRKRPLSGIFINEMSSNLWLKSILYIKSIL 140
           G  + + + L  STRK  ++G F+N  S+N W+  I +  S+L
Sbjct: 532 GAPVSDKEELWESTRKM-VAGRFVNVYSTNDWILGITFRASLL 573


>07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062
          Length = 583

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 ITNCWFEVFGVIPRGSMI 258
           IT C FEVF  IPR S+I
Sbjct: 146 ITACIFEVFSFIPRRSLI 163


>01_05_0225 - 19501643-19501903,19503974-19504477
          Length = 254

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 344 RSAVAESLSPXITNC-WFEVFGV-IPRGSMITRVSSTFKFHEKATAFRN 204
           RSA    +    T+C +F V    +PRG++ + V++   FHE+  A R+
Sbjct: 72  RSATVPLVRAAATSCGFFHVTSHGVPRGTVASAVAAVRAFHEQPAASRS 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,804
Number of Sequences: 37544
Number of extensions: 140453
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)