Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g18
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    29   2.5  

>02_02_0279 -
           8507603-8507620,8508040-8508060,8508613-8508835,
           8509204-8509553,8509631-8509729,8509811-8510105,
           8510200-8510405,8510498-8510689,8510766-8511163,
           8511258-8511444,8511473-8511528,8511800-8511872,
           8512012-8512872,8514353-8514778
          Length = 1134

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 440 WTTNQRCGDXIVVGVMIDESQLLTSPFSCF*LSRKKTXKE 321
           W  + R G   ++   ++ESQL+ SP SC  LS + + KE
Sbjct: 246 WKKDGRIGKKELID--LNESQLIESPISCHELSERCSRKE 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,076,239
Number of Sequences: 37544
Number of extensions: 82235
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)