Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g17
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    27   9.5  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    27   9.5  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    27   9.5  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    27   9.5  

>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 324 AGLLTFPKCSSKTTRIFNYNIISRIKIF 407
           AG+ TFP CS+   RIF +  I + K+F
Sbjct: 82  AGVATFPHCSNYGDRIFLWRAIGQ-KLF 108


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 324 AGLLTFPKCSSKTTRIFNYNIISRIKIF 407
           AG+ TFP CS+   RIF +  I + K+F
Sbjct: 82  AGVATFPHCSNYGDRIFLWRAIGQ-KLF 108


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 91   NNSSLQVNPSKQNQCRYSHNRSSVMYISNVSYCRLSRRS 207
            N S  + +PS   + R +   SS M  S +SYC+ S+ +
Sbjct: 960  NRSMRRTSPSDGRKSRDTPTASSSMSSSTLSYCKKSKET 998


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 91   NNSSLQVNPSKQNQCRYSHNRSSVMYISNVSYCRLSRRS 207
            N S  + +PS   + R +   SS M  S +SYC+ S+ +
Sbjct: 960  NRSMRRTSPSDGRKSRDTPTASSSMSSSTLSYCKKSKET 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,324
Number of Sequences: 27780
Number of extensions: 196200
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)