Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.4  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   5.8  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   5.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.7  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 350 NLIYFMTTQCIQVLLVWPYIIIQAL 424
           NLI F+T +C ++++V P+ ++Q L
Sbjct: 85  NLIEFLTARCPRLVVVLPWTVLQEL 109


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +1

Query: 79  FVPNYSYRSTDCIAFY**FGLRNYYPKIIKLK*STPEMAPRGAFDNQ-YDDYSPDSA--- 246
           F+ N  Y       F     L  +YP+ ++ K  +        F N     +S ++A   
Sbjct: 340 FLKNCGYYELAWSIFQANMELCYFYPRYLEKKLDSTFFESFSKFWNSDTPKFSEENARGW 399

Query: 247 ANVLDESGEQISQKFKLKLEKFKAVKL 327
            NVLD+   Q +Q F  ++  F+ VKL
Sbjct: 400 CNVLDDESSQQNQNFSSEIGIFQTVKL 426


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 600 SCYLADTR*QLQELMDLRLHRENLF 526
           SCYLA T   L  + +  +H  NLF
Sbjct: 308 SCYLASTMQSLFSIKEFAIHELNLF 332


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 534 FLCGDAGPLALATVISYRLGNKRPD 608
           F+ G AGPL  +T  + RL ++ PD
Sbjct: 126 FMVGSAGPLFSSTARTSRLDSRLPD 150


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 409 YYTSSLKM-NDPSKELQVKNNIYRIR 483
           +++ SL + NDP++ +QVKN ++R R
Sbjct: 535 HFSKSLALQNDPTEVIQVKNVLHRNR 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,260
Number of Sequences: 5004
Number of extensions: 51702
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)