Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g16
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifyi...    28   7.1  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 487 AALFCRCYFLPAILYWGHS 431
           AA+F  C+FL A LYW H+
Sbjct: 200 AAIFVLCFFLGAYLYWRHN 218


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 286 FAKSVHQIRPEH*RHYLENNHHIDYQKLPSVPFQVYFI 173
           + KS H   P   R Y +++  ++Y + PS PF V F+
Sbjct: 767 YRKSEH---PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 286 FAKSVHQIRPEH*RHYLENNHHIDYQKLPSVPFQVYFI 173
           + KS H   P   R Y +++  ++Y + PS PF V F+
Sbjct: 767 YRKSEH---PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 2 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 472 RCYFLPAILYWGHSFSKSLYNNIRPYQQNLYTLCGHKIYQI 350
           R  +LP+ + WGH F K ++      Q N+     H +Y +
Sbjct: 350 RTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSV 390


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 356 SDSIFDNKVCNFTALNFSNFSLNFCEICSPDS 261
           S  +FD K CNF  LN +  + +F E CS  S
Sbjct: 567 SSPMFDYKKCNFPLLNRARVNWDF-EFCSQKS 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,196
Number of Sequences: 27780
Number of extensions: 283970
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)