Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g13
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    30   0.21 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   4.5  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   5.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   5.9  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 386 RPWASMDANNDTTMKSGDHIFKFNRWKLKKTNLRNTQNKTL 264
           RP   +D NND++  S +H+  FN     K   R T + ++
Sbjct: 686 RPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQTTSSSI 726


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 413 RPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTTRRHRDPTS 562
           RP  PVS  N      +ST  +  I+G + + D++     ++R     TS
Sbjct: 122 RPFNPVSAANLERLLMSSTGPQTPINGELKSNDSQDTAFQSSRNMPSDTS 171


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 221 SCTFSIQIVSY*NAGPKYILL 159
           +C FSIQ V   N GP Y LL
Sbjct: 186 ACLFSIQFVLDRNNGPSYSLL 206


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 146 AILCTTKYIWDRHFSTI-RFELKKCTIFFFNLISF 247
           A LCT     D H +TI RF L    + FF + +F
Sbjct: 173 ATLCTLMVALDNHLATISRFILLDSMLLFFIISTF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,342
Number of Sequences: 5004
Number of extensions: 45185
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)