Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6g13
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 30 1.5
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 29 3.4
11_01_0561 - 4418452-4418658,4420168-4420509 28 4.6
08_02_0409 + 16837792-16837896,16839256-16839328,16839376-168397... 28 4.6
09_06_0041 - 20440266-20441381 27 8.0
09_04_0018 - 13826587-13827695,13827907-13827966,13828332-138283... 27 8.0
06_01_0904 - 6964715-6965245,6965432-6965488,6965680-6965721,696... 27 8.0
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 27 8.0
02_04_0378 - 22487876-22488531,22488625-22488703,22488982-22488987 27 8.0
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 389 LNRLPRAHRPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTTRRHRDPT 559
+ L +A G P N + S G GA A D + G G +R+H +P+
Sbjct: 8 ITALKKAFTSGPKDKPTNGQLVAQYSHQHRSGGGGAAAARDKKRWGFGRSRQHAEPS 64
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Frame = +2
Query: 368 PSKPTVVLNRLPRAHRPGVPVSPQNQTMTTTAS------TAAECGISGAIIAEDAE---- 517
P++PTVV PR+ P +P+ P + + + + E G +G + E A
Sbjct: 148 PTQPTVVSLPAPRSGGPALPLLPHHHHVRSKVAFRFPNDQGFEGGTNGGVFVEQAHHPSA 207
Query: 518 SAGIGTTRRH 547
SA +G RH
Sbjct: 208 SAVLGALERH 217
>11_01_0561 - 4418452-4418658,4420168-4420509
Length = 182
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 371 SKPTVVLNRLPRAHRPGVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGTTRRHR 550
S V ++RL RAH P VP T + ++G + + +AG+ T RR R
Sbjct: 38 SSTVVDVDRL-RAHAPPVPPPSAPPVPPETMNPPPRRQLTGEFVDVELGNAGLSTVRRRR 96
>08_02_0409 +
16837792-16837896,16839256-16839328,16839376-16839730,
16839995-16840106
Length = 214
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 325 KMWSPLFIVVSLLASIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGGMW 483
++W L I + L AS+E H +++ P F + P++D + GG W
Sbjct: 2 RVWCELGIKIVLQASMERHYYIDTRPMFQGNTEKVFNSAPEWD---LGTGGKW 51
>09_06_0041 - 20440266-20441381
Length = 371
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 475 GMWHQWSYNRGRCGICGDRYDAPTP 549
G WH++S G C +C Y P
Sbjct: 329 GEWHEYSLADGTCDVCNADYPGAPP 353
>09_04_0018 -
13826587-13827695,13827907-13827966,13828332-13828368,
13830281-13830341,13831295-13831443
Length = 471
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 367 SIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGG 477
++EA R + RA+A AG T+P + + CGG
Sbjct: 2 AVEAPCRAGAGRQRAAAALAGVHTQPPHRPAAIRCGG 38
>06_01_0904 -
6964715-6965245,6965432-6965488,6965680-6965721,
6965839-6965944,6966019-6966204,6966479-6966618
Length = 353
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 346 IVVSLLASIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGGM 480
+V + A G PP+ A+A + P E +DD V+C GM
Sbjct: 274 VVPAAAAPSPPPGSSSMPPTGAAAASSAPPKEEAAEDDYVHCHGM 318
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 419 GVPVSPQNQTMTTTASTAAECGISGAIIAEDAESAGIGT-TRRHRD 553
G+ P T TTASTA G + + A A G T RR R+
Sbjct: 67 GISTDPATATTATTASTATAPGSASNLTAATAGGGGRETWVRRARE 112
>02_04_0378 - 22487876-22488531,22488625-22488703,22488982-22488987
Length = 246
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 332 GLHSSSWYRCWRPSKPTVVLNRLPRA--HRPGVPVSPQNQTMTTTASTAAECGISGAIIA 505
G SS+ R S P + + + H + + +T TTT +T A G + A A
Sbjct: 162 GYGGSSYSRAVALSHPAIYSPLVEKHDYHPMNHSTTTKKKTTTTTTTTGAGTGRAAAAAA 221
Query: 506 EDAESAGIGTTRRHRDPTSS 565
+ +RRH + S+
Sbjct: 222 GGKTFKAVSRSRRHHESDSN 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,719
Number of Sequences: 37544
Number of extensions: 292417
Number of successful extensions: 936
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -