Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g13
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 215 TFSIQIVSY*NAGPKYILLYTK*LNANVL 129
           +F+ Q++   NA  +  LLY   ++ANV+
Sbjct: 216 SFTQQLIEMKNAQARVYLLYASKMDANVI 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = +2

Query: 326 RCGLHSS-SWYRCWRPSKPT 382
           RC   S   W+  WR S PT
Sbjct: 22  RCSAASGLRWFEIWRDSLPT 41


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 484 HQWSYNRGRCGICGDR 531
           H  S ++  C ICGDR
Sbjct: 101 HPLSGSKHLCSICGDR 116


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 484 HQWSYNRGRCGICGDR 531
           H  S ++  C ICGDR
Sbjct: 101 HPLSGSKHLCSICGDR 116


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 132 SEQ*IRERNDFKYRQNYRIVYILYNI 55
           S + I   N++KY  N     + YNI
Sbjct: 86  SNKTIHNNNNYKYNYNNNCKKLYYNI 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 410 HRPGVPVSPQNQTMTTTAST 469
           H PG P +      TTT +T
Sbjct: 649 HEPGAPATTITTITTTTTTT 668


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 273 QNITNVNSSNDIKLKKNIVHFFNSNRIV 190
           QN   +     +K+K+ + HF  SN+ V
Sbjct: 344 QNDRTLQMIAGMKIKEELPHFVGSNKPV 371



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 273 QNITNVNSSNDIKLKKNIVHFFNSNR 196
           QN  N N +N    KKN  +  N+N+
Sbjct: 424 QNTNNQNDNNQKNNKKNANNQKNNNQ 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,566
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)