Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g09
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    31   0.21 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    29   0.85 
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    28   1.1  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    27   3.4  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.9  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.9  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
 Frame = +2

Query: 278 EKSVHDVNSAYCEIHVYGLLLVYD-SYFVHILEGSEDTLHRHLRFLFKLEIDWIERMKKS 454
           EKSV D  S +C +    +L V+D S   H+ +  ED L  +L+  F L+   + R    
Sbjct: 221 EKSVIDKISLFCHVGPEQVLAVHDVSSTYHVPQLLEDKLLEYLKIRFALDKISVSRELAL 280

Query: 455 TETDRAVLLENKDKSEPKIFRRLKMLMV--YHSISTLFFARWRALTAHPPSLVGR-LDVN 625
              +     ++  +    +F+++ +++V  Y  +   + +  +AL  H     GR LD+ 
Sbjct: 281 AGENMWSSWKHLTQGYDHLFKKVTIVLVGKYTHLQDSYISVIKAL-EHSAMRCGRKLDLQ 339

Query: 626 GPISEHME 649
              + H+E
Sbjct: 340 WVEASHLE 347


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 425 IDWIERMKKSTETDRA-VLLENKDKSEPKIFRRLKMLMVYHSISTLFFARWRALTAHPPS 601
           ID I+++ KS + D A  LLE  D  +   F    M +     S LF      +   PP 
Sbjct: 644 IDEIDKVGKSHQGDPASALLELLDSEQNSAFLDYYMDIPLDVSSVLFVCTANTIDTIPPP 703

Query: 602 LVGRLDV 622
           L+ R++V
Sbjct: 704 LLDRMEV 710


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +2

Query: 149 LDVRSVLDVVEENFQKLGLKTYAIRMIYIGEHTLSKEEIIRAFEKSVHDVNSAY 310
           L  + +++ +  + ++LGL    + M +  + ++  EE++RAF + + D  + Y
Sbjct: 110 LSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFY 163


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 42  VCLKFKLNEKSVLNTE 89
           VC++ KLNEK+VLN E
Sbjct: 235 VCIEQKLNEKTVLNGE 250


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 199 WFKNIRYSYDIYR*TYII*GRNNKSVREICT 291
           W K+IRYSY + R  Y++   +    + +C+
Sbjct: 352 WLKHIRYSYTLRR-NYLLYAMDTYLPKSVCS 381


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 526 FQPPEYLRF*FIFVLQKDCTV----RFRGFFHSLNPVNF 422
           F+  ++L + F+F++  +C V     F GF HSL  V F
Sbjct: 27  FKKTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,346
Number of Sequences: 5004
Number of extensions: 60602
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)