Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6g06
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 32 0.098
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.13
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 28 1.2
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 3.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.8
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 4.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.8
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 6.4
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 8.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.5
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 8.5
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 31.9 bits (69), Expect = 0.098
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 274 DEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNI 438
DE + N +K ++ANPD+D + G + ++ E+ + +K K+ S+ N+
Sbjct: 392 DEVENFYNKSKNSLANPDYDPKIYGLQSVLWYSKLRKLIEMMDNIKNKDRSIFNL 446
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +1
Query: 64 VKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQ 243
+ RT ++F N + N L S +FRT D L S T S DSN +
Sbjct: 7 ITRTQVDDFPTTTNFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAEFDSN-TLVCDL 65
Query: 244 AKTDLHMKE 270
+TDL +E
Sbjct: 66 VETDLFTEE 74
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 265 SYANRFSLVSFLCFHSNQY-SRHYFVLCLV 179
S+ N + SFLCFHS+ + +R F L V
Sbjct: 49 SFGNAYICTSFLCFHSDDFKTRFTFPLAAV 78
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +1
Query: 16 WAVAVLLL----SENASGHRVKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQ 183
W ++ L L SEN R+ + AE LI + + F Y D +LL +
Sbjct: 114 WVISSLYLLSKKSENEVEQRLLKALAEKTAKLIFEKPTGYIDSCEEFHLYLDVLLLVGDK 173
Query: 184 DTTQSSVLNIDSNESTRMKQAKTDLHMKEID 276
D ++++ D++ R A DL +++++
Sbjct: 174 DRALDALIHQDAD---RFVDADADLLLRKLE 201
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 277 EYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNE 405
E+I+ N I +P D+Q V A + F NQ+F V E
Sbjct: 329 EHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRNQLFSVGPE 371
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 RVKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVL--NIDSNESTR 234
RV RTN E+ A++ + +PL ++ Y+ I KQ +++L ID R
Sbjct: 2207 RVLRTNKESVMAVLEAFVYDPLINWRLAPAYSPSI--DEKQSNEPNTLLGETIDGLHRKR 2264
Query: 235 MKQAKTDLHMKEIDEYIH 288
+ + L ++ E ++
Sbjct: 2265 LNEEGITLEERQKPEILN 2282
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 286 GCIRRFLSYANRFSLVSFLCFH 221
GC+ RFL Y+ +SL L +H
Sbjct: 251 GCVERFLWYSTSYSLNFHLFYH 272
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 4.8
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Frame = +1
Query: 106 LYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSN------ESTRMKQAKTDLHMK 267
+Y+++ +K S R Q+LLSN + + I SN + + K + D++ +
Sbjct: 827 IYRLSHIKLSNAHRPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPIRKDINGQ 886
Query: 268 EIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEV-KAKENS 426
+ N K + N + D K NL+ G+ I V + K +N+
Sbjct: 887 QRRSEFSAEN-VKNELENLSYQFGD--QRKRNLNRKGSTIHTVSQNIQKVSKNA 937
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 70 RTNAENFNALINLYKINPLKKSKI-FRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQA 246
++N N LI K +K KI + Y D++L +N +TT+ +L +S K+
Sbjct: 14 KSNLNFLNELIEEKKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSN--KEF 71
Query: 247 KTDLHMKEIDE 279
++++ K DE
Sbjct: 72 QSNIIKKRKDE 82
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 46 NASGHRVKRTNAENFNALINLYKINPLK 129
N ++RT+A+NF+ NL KIN ++
Sbjct: 579 NTLDKSLRRTDAKNFDQQWNLQKINTMR 606
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 64 VKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDS---NESTR 234
VKR+ + + + P ++SK Y +++L NK+ N+D +E R
Sbjct: 26 VKRSVQRHARGFPAVSRTLPKRESKSMSAYKEKMLRKNKESPGLEGKGNLDDQGIDEENR 85
Query: 235 MK-QAKTDLHMKEIDEYIHVT 294
++ + DL ++ E I T
Sbjct: 86 VRLERMNDLEIEGAQEEIRAT 106
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 64 VKRTNA-ENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMK 240
VKR N+ ++F + + + + A + LL+ + D T S + D ES K
Sbjct: 338 VKRHNSSQSFYGNRSTTNFSIINSGLYLKKDAAKNLLAKQFDATYS-YYHKDLEESVHQK 396
Query: 241 QAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGA 351
++L K +++YI + + +PDF ++ VGA
Sbjct: 397 -LNSNLE-KRVEKYIKHSCSQRNVADHPDFALKVVGA 431
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 75 QRRKFQRTYKLVQDKSVKEI 134
+R KFQ TY +++DK K++
Sbjct: 220 ERNKFQDTYVILKDKYAKQL 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,643
Number of Sequences: 5004
Number of extensions: 55822
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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